Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 52 / 9e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 49 / 1e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 49 / 1e-06 hydrolases;protein serine/threonine phosphatases (.1) AT2G04865 45 / 3e-05 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008761 [exp] 293 / 2e-98 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004818 [exp] 276 / 1e-92 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10042711 [exp] 137 / 5e-41 AT2G25010 50 / 4e-08 Aminotransferase-like, plant mobile domain family protein (.1) Lus10027047 [exp] 120 / 2e-31 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10008733 [exp] 113 / 3e-31 ND / Lus10020970 [exp] 116 / 4e-30 AT1G17930 123 / 2e-30 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003430 [exp] 108 / 1e-27 AT5G51100 60 / 6e-10 Fe superoxide dismutase 2 (.1) Lus10032693 [exp] 95 / 4e-25 AT2G25010 52 / 3e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10043226 [exp] 96 / 2e-24 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10012081 pacid=23146014 polypeptide=Lus10012081 locus=Lus10012081.g ID=Lus10012081.BGIv1.0 annot-version=v1.0 ATGGCAGAGGACGACGAGGAGGAGTTACTCGGTGGCTATGAGTCTGATACATATCCGCCTCCACCGTTTAGGGTTTCCACTAGTTTGTTTCATGCTTCAG CGAGTGTTGGTGTTGCAGTTGGGAGAGATGCTCGTTTTACTCATGCCACGAGTACACATGCTGTACCGATAGATGAGGAGGTTGAGACTACTGGGGTTGG GGGGAAATCTTTCCTGCACTTGGCTGATCGAGTCGGGGATAGAGGATGGTGGCCTGATTGCGACCAGTGTGATTCCCACTTTCGGGGGTCACATTGCACA TTATCTGTGGGAGGTCGATCCGGACTACCTAACATCCGCGATTTCAAGTTCTACACTCGTCCGAGTCATCTCAGGCATGTGATGAGATTTCAGCCTCTGA CATCGACACTTGAGATGATGATGTCTACCTTTGGACTTCTCCATTTGGGTCGTTTTGGTATGATCGATCATTTGGAAGAGGCACTGATCCATGCTTTTGT TGAGAGGTGGCAGCTAGATGGTAACACGTTCCACATGCCCTTCGGAGAGATGACCATCATAGTTCATGATGTATGGCATATTCTCCGTATCCTAGTGCAC GAACGTCCACTTCACATTCCTCGATCCAGTGTTGACCTGCATGCCGATATAGCTAGGGCTCTCTGTATCCATCACGGGGATTTGAAGTTGCCAGTTGGAG GCGCTGCAGGTGGTGATGCCCGATAG
AA sequence Show only first row Show all	>Lus10012081 pacid=23146014 polypeptide=Lus10012081 locus=Lus10012081.g ID=Lus10012081.BGIv1.0 annot-version=v1.0 MAEDDEEELLGGYESDTYPPPPFRVSTSLFHASASVGVAVGRDARFTHATSTHAVPIDEEVETTGVGGKSFLHLADRVGDRGWWPDCDQCDSHFRGSHCT LSVGGRSGLPNIRDFKFYTRPSHLRHVMRFQPLTSTLEMMMSTFGLLHLGRFGMIDHLEEALIHAFVERWQLDGNTFHMPFGEMTIIVHDVWHILRILVH ERPLHIPRSSVDLHADIARALCIHHGDLKLPVGGAAGGDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10012081 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10014303 [exp]	1.0	0.9278
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	5.1	0.9107
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	7.1	0.8547
AT5G51490			Plant invertase/pectin methyle...		Lus10031141 [exp]	7.7	0.6974
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	8.2	0.8547
AT2G23440			unknown protein		Lus10009347 [exp]	8.5	0.7396
					Lus10033096 [exp]	9.2	0.8547
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	10.1	0.8547
AT3G44150			unknown protein		Lus10021005 [exp]	10.9	0.8383
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	11.7	0.8374

Compare expression of checked genes

Lus10012081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.