Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75200 908 / 0 flavodoxin family protein / radical SAM domain-containing protein (.1) AT3G02280 59 / 7e-09 Flavodoxin family protein (.1) AT4G30210 44 / 0.0004 AR2, ATR2 P450 reductase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017589 [exp] 51 / 3e-06 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10025484 [exp] 48 / 1e-05 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260700 [exp] 991 / 0 AT1G75200 896 / 0.0 flavodoxin family protein / radical SAM domain-containing protein (.1) Potri.002G106632 [exp] 52 / 5e-07 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G153800 [exp] 52 / 9e-07 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 51 / 2e-06 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08608 [flax] [poplar] Wyosine_form Wyosine base formation CL0036 [flax] [poplar] TIM_barrel PF04055 [flax] [poplar] Radical_SAM Radical SAM superfamily CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10012082 pacid=23146023 polypeptide=Lus10012082 locus=Lus10012082.g ID=Lus10012082.BGIv1.0 annot-version=v1.0 ATGAAAGAAACAAACCGTAATGTTCCCGCTATGTCCTTCTCTTCTTCAACTCCAGCTCGGTTAACGCTCCTTGCACTCCTCTCCGCAACCTCTTTGTACT GCTTCTACAAGTCTCGCCGTCTCCGGCTCATTCAGCTCTCTCTCAACCCTAGTTCTTGCACCACCACGAAAGGGAAGGTCATCTTCGTCTCTCAAACCGG AACCTCCAAAACCCTAGCTCACCGTCTTCACAGCCTTTTGACCTCCAATGGGATCCCGTTCGACGTTGTGGATGCTAAAAGCTACGAGCCTGAGGATTTA GCCAAGGAGAGGCTAGTTGTGATCATTGCTTCCACTTGGGAAGACGGGAAGCCGCCGCCGGACGCCGATTTCTTTACTAATTGGCTCACGGAGAGTGCCG ATGATTTCAGAGTCGGATCCTTGCTTCTCTCCGGCTGCAGAATCGCGGTATTTGGAGTTGGAAGTAGTGCATATGGAGATTCGTTCAATGCGGTAGCTAG AGGCTTTAGCAGACGGTTGAGAGAATTAGGAGCCAGCGAGATTGTTCCGTTAGGGGAAGGCGATGTGGATGGTGGCGAACTGGATGTTATCTTCGAGGAA TGGAGCAGGAAGATGGTTAACATTTTGAAGGGAACTGGAGAGGAAAATGGGCATGTGATTAGTAGCAATGGGATCGTTGGTGAAGAGAGGTTCAATTGCG GAAGTAGTGATGATGAGTACGACAGTGATGAAGAGGATGAAGCGAATGACATGGAGTCTGCTGTCGTTGATCTGGAAGATATAGCTGGTAAAGGGCCATC GAGGAGATCTGCTTCTGTTAGGCAAACTAATGGGAAAGTGTGTAATGGTCCAAAAGAAATGGTAACTCCTGTGATTAGAGCGAGCTTGGAAAAGCAGGGA TACAAAATCCTTGGCTCACATAGTGGCGTTAAGATCTGTAGATGGACTAAATCTCAGCTACGAGGCCGTGGAGGTTGCTACAAACATTCATTCTACGGCA TTGACAGTCACAGGTGTATGGAGGCCACTCCAAGTTTGGCTTGTGCTAATAAGTGTGTCTTCTGCTGGAGACACCACACAAATCCCGTGGGAAAGAGTTG GCAGTGGAAGATGGATGATCCTTTAGAAATTCTGAATTCTGCATTAGAACAGCATAAACAGATGATCAAGCAAATGAAAGGAGTTCCTGGAGTTACCCAG GAGCGATTGGCTGAAGGTCTCTCTCCTAGGCATTGTGCTTTATCACTAGTTGGTGAACCTATAATGTACCCAGAGATTAATACGCTTATAGATGAATTGC ATAAAAGGAGAATATCAACTTTTCTTGTGACAAATGCCCAGTTCCCAGAAAAAATAAAATCGCTCAAGCCAATCACTCAGTTATATGTCAGTGTAGATGC TGCAACCAAAGAAAGCTTAAAAGCAGTTGATAGGCCACTATTTGGAGACTTTTGGGAACGCTTTCTTGACTCCTTGAAATCACTGAGGGATAAACAACAA CGAACAGTATACCGGTTGACACTGGTGAAAGGATGGAATACAGAGGAATTGGATGCTTATTTTCAACTGTTCAGCCTCGGACAGCCTGATTTAGTGGAAA TAAAAGGCGTCACATACTGCGGATCGTCTGCTACATCAAAATTGACTATGGAGAATGTACCGTGGCATGCTGATGTGAAAGCCTTCTCGGAAGCAATAGC TGTGAAGAGCAAAGGGGAATATGAAGTTGCTTGCGAGCATGCCCACTCGTGTTGTGTCCTGTTGGCTAGAACTGACAAGTTCAAAGTGAATGGGCAGTGG TTTACCTGGATAGACTATGAGAAGTTCCACGATCTGGTTGCTTCTGGAAAATCTTTCAATAGTTCTGATTACATGGCTGCAACACCATCCTGGGCTGTGT ATGGTGCTGAAGAAGGTGGATTCGATCCCGATCAATCTCGATATAAGAAAGAGCGGCATCATAGAGCCAAGTAA
AA sequence Show only first row Show all	>Lus10012082 pacid=23146023 polypeptide=Lus10012082 locus=Lus10012082.g ID=Lus10012082.BGIv1.0 annot-version=v1.0 MKETNRNVPAMSFSSSTPARLTLLALLSATSLYCFYKSRRLRLIQLSLNPSSCTTTKGKVIFVSQTGTSKTLAHRLHSLLTSNGIPFDVVDAKSYEPEDL AKERLVVIIASTWEDGKPPPDADFFTNWLTESADDFRVGSLLLSGCRIAVFGVGSSAYGDSFNAVARGFSRRLRELGASEIVPLGEGDVDGGELDVIFEE WSRKMVNILKGTGEENGHVISSNGIVGEERFNCGSSDDEYDSDEEDEANDMESAVVDLEDIAGKGPSRRSASVRQTNGKVCNGPKEMVTPVIRASLEKQG YKILGSHSGVKICRWTKSQLRGRGGCYKHSFYGIDSHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPLEILNSALEQHKQMIKQMKGVPGVTQ ERLAEGLSPRHCALSLVGEPIMYPEINTLIDELHKRRISTFLVTNAQFPEKIKSLKPITQLYVSVDAATKESLKAVDRPLFGDFWERFLDSLKSLRDKQQ RTVYRLTLVKGWNTEELDAYFQLFSLGQPDLVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEAIAVKSKGEYEVACEHAHSCCVLLARTDKFKVNGQW FTWIDYEKFHDLVASGKSFNSSDYMAATPSWAVYGAEEGGFDPDQSRYKKERHHRAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	0	1
AT2G31740			S-adenosyl-L-methionine-depend...		Lus10016656 [exp]	1.4	0.9137
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	3.0	0.8924
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	3.5	0.9082
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	3.5	0.9197
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	3.7	0.8963
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	4.9	0.8957
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	5.5	0.9130
AT1G42440			unknown protein		Lus10013232 [exp]	6.5	0.9035
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	7.3	0.8649
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	8.1	0.8895

Compare expression of checked genes

Lus10012082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.