Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17720 634 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2) AT1G51690 595 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015635 [exp] 686 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10037653 [exp] 686 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10007401 [exp] 529 / 0 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3) Lus10001239 [exp] 379 / 4e-126 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10042101 [exp] 363 / 8e-120 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Lus10023811 [exp] 55 / 1e-07 ND / Lus10020956 [exp] 53 / 5e-07 ND / Lus10003786 [exp] 53 / 5e-07 AT1G59520 463 / 9e-159 CW7 (.1.2.3) Lus10024741 [exp] 50 / 4e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197300 [exp] 649 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.003G034300 [exp] 637 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.006G231000 [exp] 631 / 0 AT1G17720 831 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.018G055001 [exp] 630 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2) Potri.015G079300 [exp] 395 / 2e-132 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012083 pacid=23146025 polypeptide=Lus10012083 locus=Lus10012083.g ID=Lus10012083.BGIv1.0 annot-version=v1.0 ATGACTCTTAGGCCATTGAATAAGCGACAGAAGGATAAAAATTATATCACTTTCAAGCCATGCCAGGACACGAAGAAGCAGGATGTCATCAAGTTCCAAC TTGGTGGTGTTCGCCGGAACTGTTCGATCGATGAGTACGGGGTAGCCCTTGGTCTTTACCAGGTAGAGGACTTGGTCGAGTGTGATCAGTGGGAGATTTT AAGAGGCAGGGAAATGGATGAAGCTCAACCATTTTGGAGGAGCATATCACCTCATGATTCGGCTTACAGGTCGAGTAGTTCCAAGGCGGGCATGATGGAG GTCCAATTCTCCGGTCCTTACATGTGCTCTTTCGACATACGATATGTTAGAGGGTTTGACATAATTTCAGCCATAGAATTTGATAAAACTGGGGATCATC TTGCTACTGGGGATCGTGGAGGGCGAGTGGTTCTGTTTGAGAGGACAGATACCAAGGATCATTGTGGGTCAAGGAGAGATTTGGAAAGGATCGATTATCC AATTAGTAGGCATCCTGAGTTCCGTTACAAAACAGAATTTCAGAGCCACGAACCGGAGGTCCAAGAAAAGAAGGTTAAGAAGATCTCTGAGATGAATGTT GACCCTTCAAAAGCTGTTGGAAATGGTAGTGTTGCTAGTTCAAGTAATTCAAGTGCTCCTAAGCCATGTCTTGCAAATGGTGATTGCGTTGATAGGTTGC ACAACTCTTTAAGCAATGATTTCAAAATCCCAGTCGGAGGCTTCCCATCTCTGCGTTTGCCAGTGGTTTCTAGCACAGAGACGAGTTTGATGGCCAGATG TCGCAGGGTGTATGCTCATGCTCATGATTATCACATAAATTCCATTTCAAACAATAGTGATGGCGAGACTTTTATATCAGCTGATGATTTGCGAATAAAT CTTTGGAACTTGGAAATTAGCAACCAAAGTTTCAATATTGTTGATGTGAAACCTGCAAATATGGAGGATCTAACTGAGGTAATAACTTCAGCCGAATTCC ACCCGAACCAATGTAATACGTTAGCTTATAGCAGTTCAAAAGGCTCAATCAGATTAATTGATCTACGGCAATCAGCTCTCTGCGATTCTCATGCTAAACT CTTTGAAGAACAGGAGGCCCCTGGCTCTAGGTCATTTTTCACAGAGATAATTGCATCCATCTCTGATATTAAATTTTCAAAAGATGGGCGATATTTACTT AGTCGTGATTACATGACCCTAAAGCTGTGTGATTTATATGAAAATGATTCTATATTCGACAAATTTGAGTGTTGTTTGAGTGGAGACGGGTCACGTGTAG CTACAGGATCTTATAGCAATCTGTTTCGTGTATTTGGTTGCTCCCCTGGAAGTAATGAGGCAACAACTTTGGAAGCCAGCAAAAATCCAATGAGGAGACA AGTTCAAACCCCGGCAAGGCCTTCCAGATCCCTCACCACTCTAACACGTGTTGTAAGACGGGGAGGAGGAGCAGAAAGTCCAGGAGTTGATGCAAACGGG AATTCTTTTGATGCTGCGACGAAGTTGCTGCACTTAGCGTGGCACCCGACTGAGAATTCAATTGCCTGTGCTGCCGCAAACAGTTTGTACATGTACTATG CATAA
AA sequence Show only first row Show all	>Lus10012083 pacid=23146025 polypeptide=Lus10012083 locus=Lus10012083.g ID=Lus10012083.BGIv1.0 annot-version=v1.0 MTLRPLNKRQKDKNYITFKPCQDTKKQDVIKFQLGGVRRNCSIDEYGVALGLYQVEDLVECDQWEILRGREMDEAQPFWRSISPHDSAYRSSSSKAGMME VQFSGPYMCSFDIRYVRGFDIISAIEFDKTGDHLATGDRGGRVVLFERTDTKDHCGSRRDLERIDYPISRHPEFRYKTEFQSHEPEVQEKKVKKISEMNV DPSKAVGNGSVASSSNSSAPKPCLANGDCVDRLHNSLSNDFKIPVGGFPSLRLPVVSSTETSLMARCRRVYAHAHDYHINSISNNSDGETFISADDLRIN LWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPNQCNTLAYSSSKGSIRLIDLRQSALCDSHAKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRYLL SRDYMTLKLCDLYENDSIFDKFECCLSGDGSRVATGSYSNLFRVFGCSPGSNEATTLEASKNPMRRQVQTPARPSRSLTTLTRVVRRGGGAESPGVDANG NSFDAATKLLHLAWHPTENSIACAAANSLYMYYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10012083 [exp]	0	1
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	9.4	0.8922
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	17.1	0.8736
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10037708 [exp]	18.4	0.8496
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	18.9	0.8705
AT5G11700			unknown protein		Lus10007461 [exp]	19.0	0.8581
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	20.8	0.8489
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	23.9	0.8680
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	25.5	0.8688
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	29.3	0.8551
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10002076 [exp]	29.8	0.8527

Compare expression of checked genes

Lus10012083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.