Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010259 [exp] 125 / 1e-36 ND / Lus10002894 [exp] 127 / 2e-35 AT1G06620 369 / 2e-125 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10020965 [exp] 119 / 2e-34 ND / Lus10034011 [exp] 116 / 9e-34 ND / Lus10005115 [exp] 96 / 9e-27 ND / Lus10010258 [exp] 59 / 2e-12 ND / Lus10034328 [exp] 57 / 1e-10 ND / Lus10010248 [exp] 56 / 1e-10 ND / Lus10001094 [exp] 53 / 6e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012084 pacid=23146015 polypeptide=Lus10012084 locus=Lus10012084.g ID=Lus10012084.BGIv1.0 annot-version=v1.0 ATGGCAAATGTGATAGATGGTTCTGTTGGTGGCGAGGACGGTGATGAAAATCATCGTCCTAAGAAGGTGAAGAAAGAATGGTATAATCTACATATGGTCG GTAAGTCTTTGTTTGCATTTCAGGTGTATAAAGGAGGATCTTCTTCTGTTGGTTCCCAACAAACAGCGAATCAGAATATTCCCGAGTACTTTACCACCTT TCAATCTCAAATCTTAGGCCTTCTTACTAACTCGGGGATTGGCTTGACTCTGGAATTGGAGGCGGTGAAGAATCTATTCGAAAGTCAAGGGGAGGCTGGT AAAAAAATACTCGAGGCTCAAGGATGTGGTAGTAGCACAGCGCCACCGGATACCAACACTCCAACGGACATGGATGAAGATCAAAGGGACAATGAAGACC AGACGGGAAATCAAGATGATGAAAATGACGATAAAGAGTAG
AA sequence Show only first row Show all	>Lus10012084 pacid=23146015 polypeptide=Lus10012084 locus=Lus10012084.g ID=Lus10012084.BGIv1.0 annot-version=v1.0 MANVIDGSVGGEDGDENHRPKKVKKEWYNLHMVGKSLFAFQVYKGGSSSVGSQQTANQNIPEYFTTFQSQILGLLTNSGIGLTLELEAVKNLFESQGEAG KKILEAQGCGSSTAPPDTNTPTDMDEDQRDNEDQTGNQDDENDDKE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012084 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	1.7	0.8587
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	5.8	0.8544
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	9.3	0.8389
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	10.0	0.7915
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	11.2	0.7915
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	12.2	0.7915
					Lus10000984 [exp]	13.2	0.7915
					Lus10012326 [exp]	13.6	0.6284
					Lus10040014 [exp]	14.1	0.7915
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	15.0	0.7915

Compare expression of checked genes

Lus10012084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.