Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 48 / 3e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 44 / 9e-05 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015702 [exp] 331 / 3e-116 ND 38 / 0.004 Lus10032804 [exp] 324 / 1e-113 ND / Lus10008255 [exp] 323 / 3e-109 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10003272 [exp] 302 / 7e-105 ND 39 / 0.002 Lus10010402 [exp] 294 / 5e-102 ND / Lus10000686 [exp] 277 / 4e-95 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10038548 [exp] 275 / 8e-94 ND / Lus10024265 [exp] 230 / 2e-75 AT1G17930 59 / 9e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10034059 [exp] 201 / 6e-66 AT1G48120 43 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10012087 pacid=23146013 polypeptide=Lus10012087 locus=Lus10012087.g ID=Lus10012087.BGIv1.0 annot-version=v1.0 ATGTCAGGTTGTGTGACATTGCTTCAGTCCTGGATATACGAATACTTCCCTAGTGTGAGGCCTCCGAGGACGATTCGACATGAGCGTAGGGCAGGAGAGG CTTTAGCTGGTAGGTGGGACAGTGCAGAGACACCTAGTCGGGGTGGCGGGTTCCTACAAGAGAGGTTGGACTACTATCGGCGCCTCATCGATAACATGGA TTCCCGTGATGTGAGTTGGCTTCCTTTTGGGCCGCATCCCGACCTTGAGGTCCCGGCCTCGACTTACCGTGGTCTCATCCGTTGCGCCGATGTAGGGGAG TACTACAATTCCTATTGTGTGCTCCGACAGTTTGGGTACACACAGGTGGTCCCTCCCTCGATTCCTGTGCTGTTGCGGGCCATTAGGCCCAAATCTATCA GGACCTATGCGGTCCAGTGGGCCCCGGCCGAGGATAGGATTTGGTCGGAGCAGGACTTCATCAGATTTCACCGGCTAGACCTTATGTTCGAGAGGGCAGT GTCCGGTGCGGATGTTGGTCGAGGGTACATGGACTGGTACCTCGAGCACAGTCACCCGCGCGTCGTGGCGCCGACTAACCCCGGTGTGGGAGTCCCAGCT GAGCTTCGAGTCTTCAATGGTATGGCCTCCTACTTCGATGGTACGCTTGGACGGCAACACGCGGACTCGTCTCAGGAGTACTACGACCATATGGAGGGGA TACGCATGCAGTTTCAGGATCTCTATATGGGGTATCAGAGCCAGAGAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10012087 pacid=23146013 polypeptide=Lus10012087 locus=Lus10012087.g ID=Lus10012087.BGIv1.0 annot-version=v1.0 MSGCVTLLQSWIYEYFPSVRPPRTIRHERRAGEALAGRWDSAETPSRGGGFLQERLDYYRRLIDNMDSRDVSWLPFGPHPDLEVPASTYRGLIRCADVGE YYNSYCVLRQFGYTQVVPPSIPVLLRAIRPKSIRTYAVQWAPAEDRIWSEQDFIRFHRLDLMFERAVSGADVGRGYMDWYLEHSHPRVVAPTNPGVGVPA ELRVFNGMASYFDGTLGRQHADSSQEYYDHMEGIRMQFQDLYMGYQSQRES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10012087 [exp]	0	1

Compare expression of checked genes

Lus10012087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.