Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015951 [exp] 201 / 5e-65 ND / Lus10015929 [exp] 201 / 9e-63 ND / Lus10032813 [exp] 183 / 2e-55 ND / Lus10011588 [exp] 129 / 1e-35 ND 38 / 0.009 Lus10010812 [exp] 117 / 9e-32 ND / Lus10033062 [exp] 92 / 2e-21 ND / Lus10011610 [exp] 85 / 5e-20 ND / Lus10028090 [exp] 70 / 3e-14 ND / Lus10012672 [exp] 68 / 2e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03078 [flax] [poplar] ATHILA ATHILA ORF-1 family
Representative CDS sequence Show only first row Show all	>Lus10012088 pacid=23146020 polypeptide=Lus10012088 locus=Lus10012088.g ID=Lus10012088.BGIv1.0 annot-version=v1.0 ATGCATCGAAAGAAGACTCCCGCCATAGGGCTAGGCAAAGTTACCGGCACTTCAAAAAGGCCGCGACCATCCACTTCCACAGAGCCTTCATCTGCTGGGG CTAGTCCACCACCATCTCCACCTCGGGCCTCTGTTTCCACCCGTCCGCAGCGGGGTGGAGCTTCATCCCCGGCTAACCCTCGCCGCTCTAAGAGGCCTTC TCAGCGAGAGATGCCGTCGGACCCTATTCCAGCTGCTGCTACTGCTCTACCTAGTCCAAAGGTGCAGCAGACCATCTTCGACTTAGAGCCTGGAAGTGAG TTCGTCCGTCGATACGGAGTGTATCGGACTTGGGCGACGGCACCTCAAGGATACCTCGACTTCCAGAGCTTCATGGAGGAAGGGTGGAGCACATGGCTGA TGGCATATTGCCAGAGAGCGGGCATCTGGCCACTCGTTCGACTTGATGATCAGGAGCTCCCGCATGCCACCAGGGAGTTTTACTCCACATTGAAGATATC GAGGTACACCTCGACTCAGGAGGCGGGAGGCATCAAGTTTCGACTTGGAGGTCGGACATTCTCATTTTCAACAGCTGAGCTGGCAGAGACCATGGGTTTC TATACCCCGGAGCAGGGGGCCAACCTGGAGGTTATGTCGTTGGCCACCATTGATAGGAGGCCAGTTCCGAACCTGAGGGAGTTCTGGAAGGGCATTGCTT GGGACAATGCTCCTTACTCCGCTCGATCCTCGAAGGCGAAGCGGATGAAGATTCCGAGGATGAGGCTTCTTCACCTCCTCTTCTATCGGACCATCACCTC TAGGAAGCAGTCTAGCACCTGA
AA sequence Show only first row Show all	>Lus10012088 pacid=23146020 polypeptide=Lus10012088 locus=Lus10012088.g ID=Lus10012088.BGIv1.0 annot-version=v1.0 MHRKKTPAIGLGKVTGTSKRPRPSTSTEPSSAGASPPPSPPRASVSTRPQRGGASSPANPRRSKRPSQREMPSDPIPAAATALPSPKVQQTIFDLEPGSE FVRRYGVYRTWATAPQGYLDFQSFMEEGWSTWLMAYCQRAGIWPLVRLDDQELPHATREFYSTLKISRYTSTQEAGGIKFRLGGRTFSFSTAELAETMGF YTPEQGANLEVMSLATIDRRPVPNLREFWKGIAWDNAPYSARSSKAKRMKIPRMRLLHLLFYRTITSRKQSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012088 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	2.8	0.8703
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10031601 [exp]	3.2	0.8699
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036704 [exp]	4.6	0.8684
AT2G48060			unknown protein		Lus10000212 [exp]	6.3	0.7266
AT1G78160		APUM7	pumilio 7 (.1)		Lus10041139 [exp]	18.3	0.7559
AT5G62360			Plant invertase/pectin methyle...		Lus10024596 [exp]	19.2	0.8051
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	24.4	0.7939
AT4G15790			unknown protein		Lus10004794 [exp]	25.1	0.7807
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	26.0	0.7187
AT1G71760			unknown protein		Lus10004010 [exp]	26.5	0.7758

Compare expression of checked genes

Lus10012088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.