Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67570 801 / 0 EMB246, DG1, EMB1408 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30610 377 / 7e-117 EMB88, EMB2279 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT5G02860 121 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 99 / 8e-21 PGR3 proton gradient regulation 3 (.1) AT3G48810 94 / 1e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 94 / 2e-19 RPF2 rna processing factor 2 (.1) AT1G05670 92 / 4e-19 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G18940 92 / 5e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G17140 91 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 87 / 2e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025202 [exp] 1538 / 0 AT5G67570 800 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023384 [exp] 372 / 2e-115 AT1G30610 734 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Lus10013894 [exp] 118 / 7e-27 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 116 / 2e-26 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 102 / 5e-22 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026884 [exp] 98 / 1e-20 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1) Lus10013832 [exp] 95 / 1e-19 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 93 / 4e-19 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026545 [exp] 92 / 7e-19 AT2G17140 1002 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004900 [exp] 916 / 0 AT5G67570 862 / 0.0 EMBRYO DEFECTIVE 246, embryo defective 1408, DELAYED GREENING 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G459900 [exp] 379 / 3e-116 AT1G30610 782 / 0.0 EMBRYO DEFECTIVE 88, EMBRYO DEFECTIVE 2279, pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) Potri.009G092100 [exp] 114 / 1e-25 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 112 / 2e-25 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 95 / 9e-20 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G180000 [exp] 94 / 2e-19 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G109500 [exp] 91 / 1e-18 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G205600 [exp] 90 / 3e-18 AT2G17140 1150 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 86 / 5e-17 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 84 / 8e-17 AT4G01400 576 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012091 pacid=23146026 polypeptide=Lus10012091 locus=Lus10012091.g ID=Lus10012091.BGIv1.0 annot-version=v1.0 ATGGAAACGTCAATGGCACTTCCTCCTTCTTCTTCATCTCTTCCCCCATGCAAATACCAGCCCAACGTTGAAATCATCAAGTGGAGGCTTCTGAAGAAAG GTGTAGAACCAACGCCCAAAATCATTCACACCCTCCGCAAGAAAGAAATCCAGAAACACAACCGCAAGCTGAACAAAATCAGCCGCAGCCAGCAACCTCC ACCGCTCACAGAATCAGAGAGGCAAACACTCTCGGAGGTATCCCACTTCCAGACGGTGGAGCGAGAGTACAAGGCCTTTACTGAAGCAGTTGAGTCGAGG GGAAGGAATGAGGTTCGTTTGGTGGGGAGGCCATGGGAAAGTATGGATAGAGTGAGGCTTAAGGAGATTGCTAGCGCAAGTAAAGAGTTCGATGGAGGGA ACCTGAAGAGGGATAATCTAAGGGAGCTGAAGGAAACTTTCGAGGGCAATTTGAAATGGGTGTTGGAGGATGACGTCGATTTTGAAGATGATGAAATCGC GACGAGTGTTTACGATTCCAATTGGGAACCATCAATGCGGAAACGCAGTGAAGGGGAAGCTATCCGGTTTCTCGTAAATAAGTTGTGCTTTAAAGAAGTT ACTGTGAAGGACTGGAAATTAGCTAGGATGATGAAGCAGTCAGGCTTGGAATTTACAGAAGGGCAGTTGCTGAAGATTGTGGAGAGGCTTGGGGCGAAAA GGAAATGGAAGCAAGCTTTGGCTGCTGTGGGATGGGTGTATACCGATAAGGATCGAAGTGATCTTAAGAGCAGGCAAGAGCTCTTTGGTGTCTTGTTTGT ATACACAAAGCTCTTGTCAGTCCTTGGGAAGGCAAGGAGACCCCAGGAAGCTCTTCACATCTTTAATCTGATGCGAGAAGATTGCAGTACATACCCAGAT ATGGCTGCATATCATAGTATTGCTGTCACACTCGGTCAAGCTGGTCTTGTGAAGGAATTGATGAAAGTTATTGAATGGATGCGAGAGAAGCCTCCTAAAA AGCTTAGGGATATGCGGAAGAAGGATTGGGACCCAGTCCTTGAACCAGATTTGGTTATATATAATGCTGTACTGAATTCTTGCATTCCATCGGAGCATTG GAAGGGTGTATCATGGGTATTTGAGCAGCTGAGAAAGGGTGGTCTGAAACCTAATGGAGCAACGTATGGGTTAGCAATGGAGGTGATGCTGCATTCAGGG GAATACGATTTAGTTCACGAGTTCTTTAGCAAGATGAACAGAAGTGGAGAAGCTCCAAAAGCGCCGACATACAAAGTTCTTGTTAGAGCTCTTTGGGAGG AAGGTAAAGTGAACGATGCTGTGGAAACAGTAAGGGATATGGAGCAGAGGGGTGTGGTTGGGGTAGCTAGTGTATATTATGAGCTAGCATGCTGCCTATG CCACCATGGGAGATGGCGAGAAGCCTTGCAACAGGTTGACAAAATCAAAAGGATTCCCCAATGTAAACCATTGGAGTACACTTTCACCGGCATGATCCTA GCTGCCAGGGATGGGGATCAGATCCTTGATTGCATATCTATCTTTGAGCATATGAAATCTCAGTGTGTCCCCAACATTGGGACTATAAACACGATGCTGA GAGTTTATGGTCAAAATGATTTCTTCTCTGCAGCTAAGAGTTTGTATGAAGAAATTAAGCAGACTAGCAGTGCTGATCGTGCTCCAGTCATACCAGATGG GTACACATATAGCGCTATGCTTGAAGCATCTGCTGACGCTCTCGAATGGGAATACTTTGATCACGTGTACAGAGAAATGGTGTTTTCTGGGTATCAGTTG GACCAAACAAAACATGGGTTGCTACTCGTGAAAGCTTCTAAAGCTGGGAAGGGACATCTTTTGGAACATGCATTCAATGCGATTCTGGAAGCAGGAGAAA TCCCTTGTTCATTCTACTTCATTGAACTGGTATGCCAAGCGACAGTGCATGAGAATTACAAGAAAGCAGTTGCCCTCGCGAATATCACAGCGTATGCACC ATTCCAGATCAATGAAAGCCTGTGGAAAGATGTATTTAAGTCTTATGAAAATAAAATCAGCAAGGACAGTTTACAGAGACTGTTAGTTGCACTTGGTGAT TGCGATGTTCAGTCGGAAGCAACTGTTTCGAACTTGAAAAAATCATTGCAAGAAGCAGTATGTGGGTATCAATCACCTGATGGCTTGGGAAGTTCGATTT CTAGATTCAATTCTCGAATAGCTGGTGACGAGAAGGTCAGTATGCCATCTTCAGAAGATGGGAGTATCGAAGTCCATGTCCGAACTGCATCTTTTGTTGA TTATTATGATGAGGGAAAGGACGGCGAGTTTGAACTGGAAATACTAAGTAATGAGAGTGATAACCACCACCTTGTATCTTTGCCAAATTTTCCACCGGCA GCTGAAATCCTAAATCATTGGGATGACAGTAGGAAAACCAAGCCATGGAATTGA
AA sequence Show only first row Show all	>Lus10012091 pacid=23146026 polypeptide=Lus10012091 locus=Lus10012091.g ID=Lus10012091.BGIv1.0 annot-version=v1.0 METSMALPPSSSSLPPCKYQPNVEIIKWRLLKKGVEPTPKIIHTLRKKEIQKHNRKLNKISRSQQPPPLTESERQTLSEVSHFQTVEREYKAFTEAVESR GRNEVRLVGRPWESMDRVRLKEIASASKEFDGGNLKRDNLRELKETFEGNLKWVLEDDVDFEDDEIATSVYDSNWEPSMRKRSEGEAIRFLVNKLCFKEV TVKDWKLARMMKQSGLEFTEGQLLKIVERLGAKRKWKQALAAVGWVYTDKDRSDLKSRQELFGVLFVYTKLLSVLGKARRPQEALHIFNLMREDCSTYPD MAAYHSIAVTLGQAGLVKELMKVIEWMREKPPKKLRDMRKKDWDPVLEPDLVIYNAVLNSCIPSEHWKGVSWVFEQLRKGGLKPNGATYGLAMEVMLHSG EYDLVHEFFSKMNRSGEAPKAPTYKVLVRALWEEGKVNDAVETVRDMEQRGVVGVASVYYELACCLCHHGRWREALQQVDKIKRIPQCKPLEYTFTGMIL AARDGDQILDCISIFEHMKSQCVPNIGTINTMLRVYGQNDFFSAAKSLYEEIKQTSSADRAPVIPDGYTYSAMLEASADALEWEYFDHVYREMVFSGYQL DQTKHGLLLVKASKAGKGHLLEHAFNAILEAGEIPCSFYFIELVCQATVHENYKKAVALANITAYAPFQINESLWKDVFKSYENKISKDSLQRLLVALGD CDVQSEATVSNLKKSLQEAVCGYQSPDGLGSSISRFNSRIAGDEKVSMPSSEDGSIEVHVRTASFVDYYDEGKDGEFELEILSNESDNHHLVSLPNFPPA AEILNHWDDSRKTKPWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Lus10012091 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Lus10038899 [exp]	8.1	0.8721
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	8.1	0.8839
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10001060 [exp]	8.2	0.8861
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	12.2	0.8848
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	13.0	0.8794
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	13.1	0.8838
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	21.8	0.8745
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10026884 [exp]	22.1	0.8789
AT5G15700			DNA/RNA polymerases superfamil...		Lus10031952 [exp]	22.6	0.8815
AT4G28080			Tetratricopeptide repeat (TPR)...		Lus10036604 [exp]	23.0	0.8499

Compare expression of checked genes

Lus10012091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.