Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22910 802 / 0 NAGS1 N-acetyl-l-glutamate synthase 1 (.1) AT4G37670 799 / 0 NAGS2 N-acetyl-l-glutamate synthase 2 (.1.2) AT3G57560 45 / 8e-05 NAGK N-acetyl-l-glutamate kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019262 [exp] 893 / 0 AT4G37670 799 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10011548 [exp] 846 / 0 AT4G37670 763 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Lus10030889 [exp] 45 / 0.0002 AT3G57560 450 / 1e-159 N-acetyl-l-glutamate kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G005000 [exp] 887 / 0 AT4G37670 825 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.007G005300 [exp] 877 / 0 AT4G37670 847 / 0.0 N-acetyl-l-glutamate synthase 2 (.1.2) Potri.018G001600 [exp] 54 / 1e-07 AT3G57560 417 / 1e-146 N-acetyl-l-glutamate kinase (.1) Potri.006G280100 [exp] 52 / 7e-07 AT3G57560 416 / 4e-146 N-acetyl-l-glutamate kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family CL0257 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10012093 pacid=23146019 polypeptide=Lus10012093 locus=Lus10012093.g ID=Lus10012093.BGIv1.0 annot-version=v1.0 ATGCCCTCTCTTACTCTGCCTCATTCCGCTTCTCTACACACCAGTCCTCCCCGCCACCGCCGCCTCCACTCCTCGCTTCTGCCTCCTCTACCTCTAGATA GGCTTGCCTTGTGTCGACTATCAAGACCGGTTTCGTCGTTAACAGCTTTGGTCAACAACGACGCACAGAGTCCAAATTCCGCAACGGCTGCTGTAGCGGT GAAGAGGAATGTGTTCAGCGAAGGAGTGGTGAACGGGCCCGGGGAAAGTGGGGGGAGTTCCTTCGAGGAGGAGGACGAGCAGTTCGTGAGGTGGTTCCGT GAGGCTTGGCCTTATCTTTGGGCTCATAGGGGAGCGACTTTCGTAGTTATTATCTCCGGGGAGATTGTTTCTAGTCCCTTTCTGGATCCAATTCTCAAGG CAAGTTTTTGGTTGCTTAATTTGCTACAATTTAGTTGCTCACAGCTGTTCGACGAAATTCCACCCTTCCAAACCTGTGGCTGGTTCTTGTCAATCACTCT TTTTCTCCAATTTCCGTTACTGGGGTTTTTGCTTATATGTCTGTGTGAGCAGGATATAGCATTCCTTCATCACCTTGGAATAAGGTTTGTGATTGTCCCG GGGACTCATGTCCAAATTGATAATCTTTTGGCTGAGAGAGGGCATGAGCCTAAGCATGTTGGTCCGTATAGAATAACTGACTCGGAAGCTCTAGCTGCAT CAATGGAGGCGGCTGGCAAAATTCGGATGATGATAGAGGCTAAACTTTCTCCTGGACCTTCCATTTGCAACGTTCGTAGGCATGGTGATAGTAGCAGATG GCATGACGTGGGAGTCAGTGTTGCTAGTGGCAACTTTCTAGCAGCCAAGAGACGAGGAGTTGTTGGTGGTGTTGATTTTGGGGCAACAGGTGAAGTGAAA AAAATAGATGTTGATCGTATGAGGGAGAGACTTGACAGTGGCTGCATAGTTGTGCTAAGCAACTTGGGCTATTCAAGTTCCGGTGAAGTTTTGAATTGCA ACACATATGAAGTTACTACAGCTTGTGCCTTAGCAATTGGTGCAGATAAACTTATCTGCATCATGGATGGTCCCATTCTTGATGAGAATAGGCACCTTGT TCGTTTCTTAACTCTTGACGAAGCAGACACTTTGATTCGTGAGAGGGCTAAGCAAAGTGAGGTAGCTGCTCATTATGTCAAGGCAGTTTCAGAAGAAGGT TCTTCTTCTATTGAAGACACAGATTCTACGTCTATAGTTGCTTCCTCGCAAAATGGGACAGCTATAAACTCAAAACGCAACACAGCCTTTCATAATGGAG TTGGTTTTGAGAATGGTATTGGACTCTGGTCAGGAGAACAAGGTTTTGCAATCGGTGGACAGGAAAGGCTAAGCCGATTACATGGTTATCTGTCAGAATT GGCTGCTGCAGCTTTTGTTTGCAAAGGTGGCGTCCAAAGAGTTCATCTGTTAGATGGTACAATCAGTGGAGTGTTACTATTAGAACTATTTAAGAGAGAT GGAATGGGGACTATGGTGGCTAGTGACCTATACGAAGGAACACGAATGGCTAGGGTTTCTGACCTTGCTGGAATAAAGCAGATTATTAAACCTTTACAAG AAGCAGGCGTGTTGGTGAAAAGGACGGATGAAGAGCTACTTAAGGCGTTGGATTCATATGTAGTTGTGGAAAGAGAAGGTCAAGTAATAGCTTGTGCTGC TCTTTTCCCGTTCTTTGAGGAGAAATGTGGAGAGGTAGCTGCTATTGCAGTTTCATCTGATTGCCGTGGGCAAGGGCAAGGAGACAAACTACTAGATTAT ATGGAGAAGAAGGCAGCCTCAATGGGATTGGAAATGCTGTTCCTCCTTACTACCCGCACTGCAGATTGGTTCAAGAGACGTGGCTTCTGTGAATGTTCAA TTGAGCTGATTCCAGAGCAAAGGAGGAAGAAGATCAATCTGTCCCGGAACTCAAAATACTACATGAAGAAGTTGTTTCCTGATACGAGCGGGATAAATCT CATGCCCGGGCCCGTTAGCTGGCAATAG
AA sequence Show only first row Show all	>Lus10012093 pacid=23146019 polypeptide=Lus10012093 locus=Lus10012093.g ID=Lus10012093.BGIv1.0 annot-version=v1.0 MPSLTLPHSASLHTSPPRHRRLHSSLLPPLPLDRLALCRLSRPVSSLTALVNNDAQSPNSATAAVAVKRNVFSEGVVNGPGESGGSSFEEEDEQFVRWFR EAWPYLWAHRGATFVVIISGEIVSSPFLDPILKASFWLLNLLQFSCSQLFDEIPPFQTCGWFLSITLFLQFPLLGFLLICLCEQDIAFLHHLGIRFVIVP GTHVQIDNLLAERGHEPKHVGPYRITDSEALAASMEAAGKIRMMIEAKLSPGPSICNVRRHGDSSRWHDVGVSVASGNFLAAKRRGVVGGVDFGATGEVK KIDVDRMRERLDSGCIVVLSNLGYSSSGEVLNCNTYEVTTACALAIGADKLICIMDGPILDENRHLVRFLTLDEADTLIRERAKQSEVAAHYVKAVSEEG SSSIEDTDSTSIVASSQNGTAINSKRNTAFHNGVGFENGIGLWSGEQGFAIGGQERLSRLHGYLSELAAAAFVCKGGVQRVHLLDGTISGVLLLELFKRD GMGTMVASDLYEGTRMARVSDLAGIKQIIKPLQEAGVLVKRTDEELLKALDSYVVVEREGQVIACAALFPFFEEKCGEVAAIAVSSDCRGQGQGDKLLDY MEKKAASMGLEMLFLLTTRTADWFKRRGFCECSIELIPEQRRKKINLSRNSKYYMKKLFPDTSGINLMPGPVSWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	0	1
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	4.0	0.8435
AT3G10300			Calcium-binding EF-hand family...		Lus10031049 [exp]	9.9	0.8033
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10013163 [exp]	10.1	0.8166
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	10.5	0.8266
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	11.4	0.7897
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	12.2	0.8096
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	13.6	0.8010
AT3G57810			Cysteine proteinases superfami...		Lus10028840 [exp]	15.3	0.7662
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	15.6	0.7813
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	15.7	0.8036

Compare expression of checked genes

Lus10012093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.