Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22905 39 / 0.0006 Expressed protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012094 pacid=23146010 polypeptide=Lus10012094 locus=Lus10012094.g ID=Lus10012094.BGIv1.0 annot-version=v1.0 ATGAGTTATTACAACAACCAGCAGCCACAGCCACCTGTCGGAGTCCCTCCTCCTCAAGGGTACCCGAAAGATGCATACCCACCACAAGGATACCCAGTAC AGGGATATCCTCCTCAGGGGTATCCTCAGCAGCAAGGGTATCCTCCGCAGCAGGGTTATCCTCCTCAGCAATACGCTCAGGCTCCTCCAAAGAAAGAAGT TGGCTTCCTTGAAGGATGTTCCCCACCGATTACCGAAACACTACTGCAACACATGGCCATCCCCAGAAGCTGCACACCGTGGCCGCCCTCATGTCTCCAC CTCAACCAGCTTCCTCAATTTCATACCATCTTCACACCTAACCCCGTGAATCATACAAGACTAGCGCCGCTGCGGCGCGTGAGATCACCGCGTCCTTCAG CGACCGCAGCAGGGGAACCAGCCACCACATTCTGCAGCATCGACAAGAGTAATAATATTTCTCCGGCGGAGGAGGAGAAAGAGGGAAAAGAGTTCGTCGG AGTGATGAGGGAAGCTCAGAAGTACGTGAACTTGCACAGAGGAAGAACATTTGTCGTCTTCTTATCTGCTGAGATCATCCACTCTCCCTCCTTCACCCAC CTGCTTCAGAACAATATGCAACAAAGAGAACAAACACCAAGTTTACTGGATAAACTTGAAAGTGAATGA
AA sequence Show only first row Show all	>Lus10012094 pacid=23146010 polypeptide=Lus10012094 locus=Lus10012094.g ID=Lus10012094.BGIv1.0 annot-version=v1.0 MSYYNNQQPQPPVGVPPPQGYPKDAYPPQGYPVQGYPPQGYPQQQGYPPQQGYPPQQYAQAPPKKEVGFLEGCSPPITETLLQHMAIPRSCTPWPPSCLH LNQLPQFHTIFTPNPVNHTRLAPLRRVRSPRPSATAAGEPATTFCSIDKSNNISPAEEEKEGKEFVGVMREAQKYVNLHRGRTFVVFLSAEIIHSPSFTH LLQNNMQQREQTPSLLDKLESE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	0	1
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	1.4	0.9309
					Lus10025204 [exp]	1.7	0.9390
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	3.5	0.9270
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	4.9	0.9146
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	5.2	0.9280
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	6.3	0.9225
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	6.9	0.8918
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	7.5	0.9185
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	7.7	0.8816
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	8.9	0.9107

Compare expression of checked genes

Lus10012094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.