Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41290 291 / 2e-96 SSL2 strictosidine synthase-like 2 (.1) AT3G57030 260 / 2e-84 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G08470 236 / 1e-74 SSL3 strictosidine synthase-like 3 (.1) AT5G22020 234 / 9e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G59530 216 / 5e-67 LAP3 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT2G41300 211 / 5e-65 SSL1 strictosidine synthase-like 1 (.1) AT3G57010 197 / 6e-60 Calcium-dependent phosphotriesterase superfamily protein (.1) AT3G57020 195 / 3e-59 Calcium-dependent phosphotriesterase superfamily protein (.1.2) AT1G74010 146 / 6e-41 Calcium-dependent phosphotriesterase superfamily protein (.1) AT1G74020 139 / 2e-38 SS2 strictosidine synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008451 [exp] 229 / 8e-72 AT1G08470 600 / 0.0 strictosidine synthase-like 3 (.1) Lus10010449 [exp] 224 / 1e-71 ND 105 / 2e-28 Lus10008151 [exp] 218 / 3e-67 AT3G59530 613 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10019377 [exp] 217 / 7e-67 AT3G59530 609 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Lus10013370 [exp] 202 / 5e-62 AT1G08470 520 / 0.0 strictosidine synthase-like 3 (.1) Lus10034411 [exp] 193 / 2e-59 AT3G57030 232 / 1e-74 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006330 [exp] 171 / 3e-50 AT3G57030 224 / 2e-70 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10006331 [exp] 167 / 8e-49 AT3G57030 239 / 1e-76 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10029599 [exp] 158 / 1e-45 AT3G57030 204 / 3e-63 Calcium-dependent phosphotriesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040900 [exp] 340 / 2e-115 AT2G41290 381 / 4e-131 strictosidine synthase-like 2 (.1) Potri.016G037700 [exp] 325 / 2e-109 AT2G41290 402 / 3e-139 strictosidine synthase-like 2 (.1) Potri.016G037900 [exp] 272 / 5e-89 AT3G57030 523 / 0.0 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.017G027600 [exp] 229 / 8e-72 AT3G59530 640 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.007G130700 [exp] 226 / 1e-70 AT3G59530 662 / 0.0 LESS ADHERENT POLLEN 3, Calcium-dependent phosphotriesterase superfamily protein (.1.2) Potri.001G214500 [exp] 225 / 1e-70 AT1G08470 628 / 0.0 strictosidine synthase-like 3 (.1) Potri.T015518 [exp] 221 / 3e-69 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.008G109966 [exp] 221 / 3e-69 AT3G57030 318 / 5e-107 Calcium-dependent phosphotriesterase superfamily protein (.1) Potri.012G046200 [exp] 138 / 6e-38 AT1G74000 206 / 2e-64 strictosidine synthase 3 (.1) Potri.015G037700 [exp] 137 / 1e-37 AT1G74000 218 / 7e-69 strictosidine synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03088 [flax] [poplar] Str_synth Strictosidine synthase
Representative CDS sequence Show only first row Show all	>Lus10012095 pacid=23154924 polypeptide=Lus10012095 locus=Lus10012095.g ID=Lus10012095.BGIv1.0 annot-version=v1.0 ATGACGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTGCGCGTTCGGCGGCGATGGAGGTCCGTTCACCGGAGTTTCTGACGGGCGGG TGCTCAGGTGGGTCGGAGCTGAACGGCGGTGGACTGACTTTGCCGTTACTTCTCCAACGAGTTCAACTTACAATTTTCTCGACTCACTGACTGCTTGTCA ACTTGGAAAACCTCGGATCAAGAGAAAGGGATGTGAAGGGCTGGATCCACCGCATCAGGAAGAGATAGAGCATATCTGTGGGCGTCCGTTAGGATTGGAG ATTGACCAATCAAACGGTAATATGTACATTGCTGATGCCTACAAGGGATTGCTCCGAGTGGGCCCCGGAGGTGGATTGGCCCATCCGATTGTGACACGTG TTAATGGTGCTCCTCTCGTCTTCACCAACGGCTTGGATGTCAACCAGTCATCCGGAATCGTTTACTTCACCGATAGCAGCTCCCGTTTTTCGAGAAGACA CCACATACTGATTGTACTCAGCGGAGATAGTACCGGAAGGTTCATAAAGTACGACCCCAAAACTCGAAAAGTGACCCAACTAGCAAGCAACCTAATGTTC CCCAATGGGGTGGCAATAACCCATGATGGGCAATCCATCTTGGTAGTGGAGACAACCAATGGGAGGGTCCTAAAGTACCACATTGAGAGTGGTGAGTTGA AACTATTTGCCCAACTAGATGGGTATCCAGACAACATAAGGAGAAGCCCAAGAGGTGGGTATTGGGTTGGGATGTACTCCAAGAGAACCAAGTTGCTTGA GTGGGTGGCATCAAACCCATGGATTGGGAAATCATTGACCAAGTTGGTTCCATTTGGAGTGATTTCTAGGGTTCATTCCTATTTGGGTGAAGGGAATATT GGGTTAGGGGTTAGGTTAAGTGAAGATGGTGAGTCTTTGGAGAGATTCGATGAGAGTGATGAGCATGAAGAGTTGAAGTCAATTAGTGAGGTTATGGAGA AGGATGGGGAATTGTGGGTTGGTTCTGTTGATTTGCCTTTTGCCGCCAAAGTTCGTTGCTCGTGA
AA sequence Show only first row Show all	>Lus10012095 pacid=23154924 polypeptide=Lus10012095 locus=Lus10012095.g ID=Lus10012095.BGIv1.0 annot-version=v1.0 MTTXXXXXXXXXXXXVCAFGGDGGPFTGVSDGRVLRWVGAERRWTDFAVTSPTSSTYNFLDSLTACQLGKPRIKRKGCEGLDPPHQEEIEHICGRPLGLE IDQSNGNMYIADAYKGLLRVGPGGGLAHPIVTRVNGAPLVFTNGLDVNQSSGIVYFTDSSSRFSRRHHILIVLSGDSTGRFIKYDPKTRKVTQLASNLMF PNGVAITHDGQSILVVETTNGRVLKYHIESGELKLFAQLDGYPDNIRRSPRGGYWVGMYSKRTKLLEWVASNPWIGKSLTKLVPFGVISRVHSYLGEGNI GLGVRLSEDGESLERFDESDEHEELKSISEVMEKDGELWVGSVDLPFAAKVRCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	0	1
AT4G28290			unknown protein		Lus10031644 [exp]	2.6	0.8994
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10013001 [exp]	4.6	0.8825
AT5G50230			Transducin/WD40 repeat-like su...		Lus10015925 [exp]	5.8	0.9167
AT2G33390			unknown protein		Lus10011781 [exp]	7.1	0.8532
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	7.3	0.9100
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	8.4	0.9055
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10043373 [exp]	10.8	0.8165
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	11.3	0.8700
AT5G43870			Plant protein of unknown funct...		Lus10021903 [exp]	12.1	0.8544
AT1G15260			unknown protein		Lus10035880 [exp]	13.4	0.9067

Compare expression of checked genes

Lus10012095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.