Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56930 450 / 5e-156 DHHC-type zinc finger family protein (.1.2) AT5G05070 395 / 4e-135 DHHC-type zinc finger family protein (.1) AT2G40990 377 / 5e-128 DHHC-type zinc finger family protein (.1) AT3G56920 341 / 4e-115 DHHC-type zinc finger family protein (.1) AT3G48760 334 / 2e-110 DHHC-type zinc finger family protein (.1) AT3G26935 333 / 2e-110 DHHC-type zinc finger family protein (.1) AT5G50020 321 / 7e-106 DHHC-type zinc finger family protein (.1.2) AT4G24630 318 / 2e-105 DHHC-type zinc finger family protein (.1) AT5G41060 292 / 5e-95 DHHC-type zinc finger family protein (.1.2) AT5G04270 85 / 2e-18 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010447 [exp] 682 / 0 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10027274 [exp] 397 / 4e-136 AT5G05070 468 / 2e-164 DHHC-type zinc finger family protein (.1) Lus10038990 [exp] 390 / 3e-133 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1) Lus10035395 [exp] 392 / 2e-130 AT5G05070 463 / 1e-158 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 339 / 6e-113 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 338 / 1e-112 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 333 / 4e-110 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 333 / 5e-110 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 320 / 2e-105 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G025100 [exp] 505 / 4e-177 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2) Potri.006G027400 [exp] 487 / 3e-170 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.016G025200 [exp] 409 / 7e-141 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 399 / 8e-137 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 329 / 5e-109 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 328 / 1e-108 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 328 / 3e-108 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 326 / 5e-108 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 327 / 9e-108 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 325 / 1e-107 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012096 pacid=23155007 polypeptide=Lus10012096 locus=Lus10012096.g ID=Lus10012096.BGIv1.0 annot-version=v1.0 ATGGCAGTCGATAAACCCAAGAAGCTGTACCAAGTTTGGAAAGGAAACAATAGGTTTTTCTGTGGTGGGAGACTGATCTTTGGTCCCGATGTTGCCTCGA TGTTCTTGTCGATGTTCCTTATCGCTGCTCCTTCGATTGCGTTCTGTGCTAAGCTGTATTACAAGATTGTGAAGGATGGTGTCGAGAATCCGGCACGTTG GTATTCTGTCTTGGTTGTTGGATGTTTACTCACTATCTTGGACCTAGTGTTCCTACTATTGACATCTTGCAGAGATCCAGGAATAGTGTCGAGAAACTCA AAGCCTCCAGAGTCGGAAGATAATTCAGACATAACTACCCCTTCCATGGAGTGGGTGAATGGTAGAACCCCACACTTGAAGCTACCACGCTCCAAGGACG TGGTAGTAAATGGCCATACGGTGAAAGTCAAGTACTGCGATACGTGTTTGCTTTATCGCCCTCCTCGGGCTTCTCATTGTTCGATCTGCAACAACTGCGT CCAGAGGTTTGATCATCACTGTCCCTGGGTCGGACAGTGCATTGGCATACGTAATTACCGGTTTTTCTTCATGTTCATATCAACAGCAACCATCTTGTGT ATATATGTCTTTGTGGTCTCTTGGATCAATCTCCTTCACAGAGGTGTCCGTGTTTGGAAAGCTATGTCGCAAGATGTGGTCTCTGATTTCCTTATAGTCT ACTGTTTCATTTCTGTCTGGTTCGTTGGAGGCCTGTCAATCTTCCATTTCTATCTGATCTGTACAAACCAGAGTACCTATGAGAATTTCCGGTACAGATA CGACAAGAAGGAGAATCCATACAACAAAGGAACTGCGAAAAACCTGTTTGAAACCTTCCTCACAAGGATCCCACCTTCCACGATCAAGCTTCGCTCAATC GCGGTAGAAGATCCTCAAGTTGCAATGGAACCATTGGTGGAAGATGAGTTTACGGGGTCGAAGGATAGCTATGATGTTGAGAGGAGAGTTAAGTATGCAA GGGGTCATAACTACTCTCTGCCTGAGATTTTGCGGAATCTGGATTTCGACGATGATGACGACTCTCTTGATAACTCAAAGAAGCTCGGAGGTGGAAGGAC GTCTGCTTATGAACAAAGGGTTACTAGTGATGACAATGTGAAAGACAATACTGTAGACGAAATGATGAAAAGCTTGAGGAGGGAATCTTCACATGTCAAA GAGGGGGAGATAGAATCTGTAGAAACCACCAGCTCTGAAGATTCGAATGGAGACACATCCATCGAGAAATCGGCAGCTGATGATTGTGCAACGAGTCCTG GCTATGATCACAGTACTACGAAGCAAACCCTGCAAATGGGTAGCCCTAGATAA
AA sequence Show only first row Show all	>Lus10012096 pacid=23155007 polypeptide=Lus10012096 locus=Lus10012096.g ID=Lus10012096.BGIv1.0 annot-version=v1.0 MAVDKPKKLYQVWKGNNRFFCGGRLIFGPDVASMFLSMFLIAAPSIAFCAKLYYKIVKDGVENPARWYSVLVVGCLLTILDLVFLLLTSCRDPGIVSRNS KPPESEDNSDITTPSMEWVNGRTPHLKLPRSKDVVVNGHTVKVKYCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTATILC IYVFVVSWINLLHRGVRVWKAMSQDVVSDFLIVYCFISVWFVGGLSIFHFYLICTNQSTYENFRYRYDKKENPYNKGTAKNLFETFLTRIPPSTIKLRSI AVEDPQVAMEPLVEDEFTGSKDSYDVERRVKYARGHNYSLPEILRNLDFDDDDDSLDNSKKLGGGRTSAYEQRVTSDDNVKDNTVDEMMKSLRRESSHVK EGEIESVETTSSEDSNGDTSIEKSAADDCATSPGYDHSTTKQTLQMGSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56930			DHHC-type zinc finger family p...		Lus10012096 [exp]	0	1
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10043405 [exp]	15.9	0.6274
AT1G76065			LYR family of Fe/S cluster bio...		Lus10005622 [exp]	90.1	0.5527
AT3G10350			P-loop containing nucleoside t...		Lus10021449 [exp]	104.3	0.5295
AT5G37475			Translation initiation factor ...		Lus10028057 [exp]	116.7	0.5361
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	122.5	0.5379
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031126 [exp]	141.7	0.5269

Compare expression of checked genes

Lus10012096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.