Plant FIBer expression Database

Lus10012097 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56900 147 / 8e-43 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010447
[exp]
240 / 7e-76 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G030400
[exp]
170 / 3e-51 AT3G56900 653 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10012097 pacid=23154996 polypeptide=Lus10012097 locus=Lus10012097.g ID=Lus10012097.BGIv1.0 annot-version=v1.0
ATGCCGTCGTTTCCGCAGCCAGGTTCCGTCACCATCTGCGAAATCAACCGCCAACTGATTGCGGATGAGAATTTTTCGGACGATCGAGCCAGGGATGCGT
ATGGAAAACTCCTGGGTACTGTGTTCAGTCCGGTTCAATTCCATGCCGATCAGCTGGCGACTCCGGAGCAGGAATTGACGCCACAGGGAAGTAGCACTGG
AGATACTGTTGGGCGGAATATTATAGGGAAAGCGTTTCAGGGCTTGGTAAACCTGTTGCCAGAGGTTGGTCTCCAAGGTGTTTCTTGGCATCAGCATAAG
CACATAATTGCATTTGTTTCTGGCCAAAACCAAGTTACAGTTTGCGATTATGAAGATTCAGGTAATGCGCCAGTAGGAAGATCTGGCATTACCTCATACT
TAGGCAATAGTTCTGGAGGATCTGGATCTCAGTGGGCTCTTGTTGATTTTCTTCGAAGTAGCAACAATGAACAAATAACTGCACTCTCATGGAGTCCAGA
TGGAAGATATCCTTGTCACTGTTAA
AA sequence
>Lus10012097 pacid=23154996 polypeptide=Lus10012097 locus=Lus10012097.g ID=Lus10012097.BGIv1.0 annot-version=v1.0
MPSFPQPGSVTICEINRQLIADENFSDDRARDAYGKLLGTVFSPVQFHADQLATPEQELTPQGSSTGDTVGRNIIGKAFQGLVNLLPEVGLQGVSWHQHK
HIIAFVSGQNQVTVCDYEDSGNAPVGRSGITSYLGNSSGGSGSQWALVDFLRSSNNEQITALSWSPDGRYPCHC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56900 Transducin/WD40 repeat-like su... Lus10012097
[exp]
0 1
AT2G13540 ENS, CBP80, ABH... ENSALADA, CAP-BINDING PROTEIN ... Lus10019032
[exp]
8.7 0.9162
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Lus10007498
[exp]
11.7 0.9145
AT3G19050 POK2 phragmoplast orienting kinesin... Lus10027934
[exp]
14.9 0.9067
AT5G46070 Guanylate-binding family prote... Lus10015327
[exp]
16.4 0.8968
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Lus10043473
[exp]
18.0 0.9060
AT2G20590 Reticulon family protein (.1.2... Lus10039890
[exp]
20.1 0.9061
AT2G13540 ENS, CBP80, ABH... ENSALADA, CAP-BINDING PROTEIN ... Lus10005012
[exp]
20.6 0.8993
AT3G20540 PolIB, POLGAMMA... polymerase I B, polymerase gam... Lus10040049
[exp]
21.2 0.8981
AT4G11970 YTH family protein (.1.2.3) Lus10006706
[exp]
24.3 0.8872
AT1G77600 ARM repeat superfamily protein... Lus10018180
[exp]
27.0 0.8970

Lus10012097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.