Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19750 239 / 1e-78 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT5G43140 92 / 4e-22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT2G14860 91 / 1e-21 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 83 / 1e-18 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 70 / 2e-14 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G42770 67 / 5e-13 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT3G24570 61 / 1e-10 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G04470 59 / 2e-10 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT1G52870 57 / 3e-09 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 53 / 9e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010446 [exp] 323 / 8e-112 AT5G19750 258 / 2e-86 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10039003 [exp] 271 / 2e-91 AT5G19750 241 / 1e-79 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10027297 [exp] 233 / 8e-70 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10002118 [exp] 92 / 1e-21 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10011424 [exp] 89 / 1e-20 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10034922 [exp] 77 / 2e-16 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 77 / 2e-16 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10034769 [exp] 75 / 6e-16 ND / Lus10018700 [exp] 75 / 3e-15 AT5G43140 253 / 2e-83 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029700 [exp] 280 / 4e-94 AT5G19750 257 / 5e-85 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.006G032500 [exp] 276 / 8e-93 AT5G19750 279 / 8e-94 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 88 / 2e-20 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.009G090600 [exp] 88 / 3e-20 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.011G007100 [exp] 71 / 9e-15 AT4G04470 230 / 1e-77 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G081600 [exp] 67 / 4e-13 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.004G008700 [exp] 63 / 8e-12 AT4G04470 209 / 2e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.018G037100 [exp] 62 / 2e-11 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.010G032900 [exp] 61 / 8e-11 AT2G42770 271 / 9e-93 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G404600 [exp] 55 / 2e-08 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10012098 pacid=23154962 polypeptide=Lus10012098 locus=Lus10012098.g ID=Lus10012098.BGIv1.0 annot-version=v1.0 ATGGCGCAGAACACTGCAATTCTCACCCGCCAAACCTCCGCGCTCGGTGGCGGTATTTCTTCATCCCAGTCGCGCCGCCATTTCGTTCCCAATCAGCCGC CTCATCTTCGAGTTTCTGCTTCTTCTTCGCCGTCTTTTTCTGGTCGATTCCTTCTGTTTTCGGATTGCAGTCCGTCCGGAGCTGGATTCCGACAACTGAA TTTCAATCAATTTCGTATTTTGGCGGCTTCTGATGGCGGGTCGGGTGGTGCCAGCGGGATTGGTGGCTCCGGCGATGGGAATTCCGGTGGCGGCGACGAA TCTGGCGGCGGCTCTGACTGGTCTTTACTGTCATGGTATTTGAGTCTTCTCGCCGAGCATCCTGTTCTCACCAAAGCTGTCACCTCCGCAGTCCTAACTT TTCTTGGCGACTTAATCTGTCAGCTTGTGATTGATCAAGTTCCTTCTCCAGACTTGAAGAGGGCATTCCTGTTTGCATCCCTGGGACTTGTGCTCGTAGG TCCAACTTTGCATTTCTGGTACTTGTATTTGAGTAAACTGGTGACAGTTCCTGGAGGAAGAGGTGCATTGACACGTCTTGTACTCGACCAGTTCCTATTC TCTCCTGTGTTCATCGGAGTGTTCTTATCAACATTGGTGGCGCTTGAAGGCAGGCCATCGCAAGTCGTACCAAAGCTCCAACAGGAGTGGCTTTCTTCAG TTGTAGCAAATTGGCAGCTGTGGATTCCATTCCAGTTCCTCAACTTCAGGTTCATGCCGCAACAGTTTCAGGTTCTGGGTGCAAATGTCATTGCTCTGGT GTGGAATGTGATACTCTCATTCAAAGCACACAGAGAGATCCAGCAAAAGTAG
AA sequence Show only first row Show all	>Lus10012098 pacid=23154962 polypeptide=Lus10012098 locus=Lus10012098.g ID=Lus10012098.BGIv1.0 annot-version=v1.0 MAQNTAILTRQTSALGGGISSSQSRRHFVPNQPPHLRVSASSSPSFSGRFLLFSDCSPSGAGFRQLNFNQFRILAASDGGSGGASGIGGSGDGNSGGGDE SGGGSDWSLLSWYLSLLAEHPVLTKAVTSAVLTFLGDLICQLVIDQVPSPDLKRAFLFASLGLVLVGPTLHFWYLYLSKLVTVPGGRGALTRLVLDQFLF SPVFIGVFLSTLVALEGRPSQVVPKLQQEWLSSVVANWQLWIPFQFLNFRFMPQQFQVLGANVIALVWNVILSFKAHREIQQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10012098 [exp]	0	1
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	2.2	0.8565
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	5.7	0.8214
AT3G23330			Tetratricopeptide repeat (TPR)...		Lus10019350 [exp]	6.9	0.7714
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	10.2	0.8422
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041334 [exp]	10.2	0.7732
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	13.0	0.7860
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	14.4	0.7624
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	15.9	0.7932
AT4G36790			Major facilitator superfamily ...		Lus10041712 [exp]	16.2	0.7597
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	21.0	0.7771

Compare expression of checked genes

Lus10012098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.