Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22270 648 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 616 / 0 Topoisomerase II-associated protein PAT1 (.1) AT1G79090 490 / 2e-161 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010445 [exp] 1514 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10039002 [exp] 1150 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 1080 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10031788 [exp] 553 / 0 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 522 / 1e-173 AT1G79090 766 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021900 [exp] 874 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020100 [exp] 862 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 624 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.011G143900 [exp] 610 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 565 / 0 AT1G79090 687 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012099 pacid=23154903 polypeptide=Lus10012099 locus=Lus10012099.g ID=Lus10012099.BGIv1.0 annot-version=v1.0 ATGGAGCGATCTACTTCTGGTAAAGATTCCTTCTTCAAGGACTTCAGTGAGGCTTCCTCCTCCGGTTCTTCGCGGTTTGATGCATCACAGTATGAGTTTT TTGGTCAACATGCTGGGCAAGGAGTGGAGCTAAGTGGTCGGGAACAGGATGACAATCCTGTCTTTGGACCTGTTGATGATGAATACCGCTTGTTTGATAG AGATGAGAGTGCAAGTGTAGGATCTCTATCAGATATGGATGATTTGGCAAGTACTTTTGCAAAGTTGAACCGAGTTGTTAGTGGTCCAAGGAATCCAGGA GTGATCGGTGATCGGGGATCAGGATCATTCTCCAGGGAAAGTTCTTCTGTTGCTGAATGGGCGCAGGATGGTGAATCTTCTTCCTGGCTCGATCAGCAGA GATTTGATGCAGAATTATTTCATGATTCCCGGTCTCTATCGCTTAACCAACCTTTATCTGCCAGGTTTACGGAATCAAAGCCTTTGTACAGAACCTCCTC CTATCCACAGCAGCAACTTGGAGAATCCAGTAACTGGCTAGATCAGCAGATATTCGATACAGAAAGTGTTCAAGAAAACAAGAGATGGTCATCACAGCCG TCGATTCATTTTGCGGAATCAAAACCGTTGCACAGAACTTCTTCGTATCCTCTACCACCACAGCATCAGCATCATTTCTCCAACAAACCGGCCCCTGCAG TGAAATCGAATTTCACTTCTTTTCCTCCTCCCGGGGGCGGTACAATCGATCAGCCTGTTCCACCGCTGTACCATAGCGTCCCTTCTCCTTCTGCCGGATT GCAGTTGCCATTTTCTGCCCCGAATTTGTCTCCTTTATCCAACCCTAATTTCCATTTGGCTGGTTTACATCGTGGAGCATGCTCTGGCCTTTCTTTTAGT AACAGGCCTCAAAACCAATGGGTCAACCCGGGTGGCTTGCTGAGTGTTGACCATGCTAGTCTCTTGCAGAGTGTATTGCAACAACAGCTCTCTCATCAGA ATGCGTTGATGTCTCCACATTTGTTGTCACCTCAGCAGCATCGGCTGCATTCTTCGATTCAACCGTCTATGGCTCATCTGGCTCAACTTTATGCTCCGAA TTCCTCAGCTCAGAGATTAATGCTCGGTTTAGGTGATGGCAGGGATCAGCAGCATCAAAAGCCTAAATCTTCACATCGAGGGCGGCATAATTCACGATCT TCTCAACAGGGTTCTGATTCCGGTACTCAGAGAAGTGATAGTGGTGGTGTATCTGTTCAGTTTAGATCGAAACATATGACATCTGAAGAGATCGAGAGCA TTCTGAAAATACAGCATGCTGCTACACACGGTAACGATCCTTACGTAGATGATTACTACCATCAAGCTCGTCTCGCCAAGAGATCTACCGGCTCAAGATC AAAGCATCACTTCTGCCCTTCTGTTCTGAAAGAGCAACATTCCCGCTCTCGTAATAATAGCAGTAGCACCGAGCAGCAGTCTTATCATGTTGATGCACTC GGTAAGGTTCCGATACCCACCATACGAAAGCCTAGCTCCCTTCTCAAACCGGGTCCTATTTCTGCTGATTGCTCTGATCAGGTTTTGGAGAGGCCGCTCG AGAAGGAGCCGATGCTTGCAGCTAGAATGATGATTGAAGATGGGTTATCTGTGCTTATTGATGTCGAGGACATTGATCGATATCTTCTGTTTAATCAGCC TCAAGAAGGCGGTGTTCAGCTCAGGCGGAGGCGCCAGATCCTGCTCGAGACTTTGGCTTCAGCACTTCAGCTCGCCGATCCTTTAGGCCAGAGTGGGACC GCTTCTGGACCTGCATCCAAGGACGATATTGTCTTTTTGCGGTTAGGGTCTATGCCGAAGGGTAGACAGCTTATCTCGAAGTTTCTTCAGCTTCTTATCC CCGGTGATAATCTCGTCCGTGTTGTCTGCATGGCTGTTTTCCGACACCTGAGGTTCCTTTTCGGTGGTCTTCCCTCTGATCCAGCGGCAGCCAAGACGAG TGTTCATCTGGCTAAGATAGTGTGTTCTTGCATTAGCGGTATGGATCTTCATGCACTTAGTGCCTGCCTTGTTGCGGTCGTTTGCTCGTCGGAACAGCCG CCGTTTCGGCCTCTCGGTAGTCCAGCTGGCGACCGTGCCTCGGTGGTTTTGAAGTCTGTTCTCGAGAGGGCCACTTACCTCTTGACTGATCCTCAAGCTG CCGTCGCCAGCTGTCCTGTGCCGAATTTCCAGTTCTGGCAGGCGTCGTTTGACGAATTCTTTGATATGCTGACGAAGTATTGCCTTGCGAAATACGAAAC TATCCTTCAGTCAGTCTATGCGACAAAGACGCCAGCTGGCACGGATAAAGATATCGATGAAGATGTACATGCAGCTACGAAGCGGGAGATGCCTGTTGAG CTGCTTCGCGCTTGCCTTCCGCACACTAATGATAAGCAAATGGAGTTTTTAAGACATTTTGGACAGCAGCGCAGCTCCGTGACTGTGATGGGCATGCATA AGGGCTCCAGTGTTCCGATAAGCTCCGAATTGGTGAGAAGCTGA
AA sequence Show only first row Show all	>Lus10012099 pacid=23154903 polypeptide=Lus10012099 locus=Lus10012099.g ID=Lus10012099.BGIv1.0 annot-version=v1.0 MERSTSGKDSFFKDFSEASSSGSSRFDASQYEFFGQHAGQGVELSGREQDDNPVFGPVDDEYRLFDRDESASVGSLSDMDDLASTFAKLNRVVSGPRNPG VIGDRGSGSFSRESSSVAEWAQDGESSSWLDQQRFDAELFHDSRSLSLNQPLSARFTESKPLYRTSSYPQQQLGESSNWLDQQIFDTESVQENKRWSSQP SIHFAESKPLHRTSSYPLPPQHQHHFSNKPAPAVKSNFTSFPPPGGGTIDQPVPPLYHSVPSPSAGLQLPFSAPNLSPLSNPNFHLAGLHRGACSGLSFS NRPQNQWVNPGGLLSVDHASLLQSVLQQQLSHQNALMSPHLLSPQQHRLHSSIQPSMAHLAQLYAPNSSAQRLMLGLGDGRDQQHQKPKSSHRGRHNSRS SQQGSDSGTQRSDSGGVSVQFRSKHMTSEEIESILKIQHAATHGNDPYVDDYYHQARLAKRSTGSRSKHHFCPSVLKEQHSRSRNNSSSTEQQSYHVDAL GKVPIPTIRKPSSLLKPGPISADCSDQVLERPLEKEPMLAARMMIEDGLSVLIDVEDIDRYLLFNQPQEGGVQLRRRRQILLETLASALQLADPLGQSGT ASGPASKDDIVFLRLGSMPKGRQLISKFLQLLIPGDNLVRVVCMAVFRHLRFLFGGLPSDPAAAKTSVHLAKIVCSCISGMDLHALSACLVAVVCSSEQP PFRPLGSPAGDRASVVLKSVLERATYLLTDPQAAVASCPVPNFQFWQASFDEFFDMLTKYCLAKYETILQSVYATKTPAGTDKDIDEDVHAATKREMPVE LLRACLPHTNDKQMEFLRHFGQQRSSVTVMGMHKGSSVPISSELVRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	1.0	0.8450
AT3G04470			Ankyrin repeat family protein ...		Lus10029612 [exp]	1.4	0.8161
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	6.9	0.7436
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	9.4	0.7464
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	9.5	0.7470
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10030002 [exp]	9.5	0.7660
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	13.3	0.7753
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	13.7	0.7819
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	17.8	0.6813
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	17.9	0.7685

Compare expression of checked genes

Lus10012099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.