Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51110 476 / 5e-168 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G22240 45 / 5e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26070 43 / 0.0002 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 42 / 0.0007 FIB fibrillin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010444 [exp] 683 / 0 AT1G51110 490 / 2e-173 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G011700 [exp] 520 / 0 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 45 / 3e-05 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 43 / 0.0002 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.004G003200 [exp] 42 / 0.0007 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10012100 pacid=23154987 polypeptide=Lus10012100 locus=Lus10012100.g ID=Lus10012100.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTTATAACTGGCGCCCTCGCACTTTCTCCACTTTTGAACAACAACGCTTCACACCCTACATCGTTCCATGGAAGGCGAATCCGGAGCCATT TCCGATGCCATTCCTCGATTCTAAACCAGCAGGAAGAAAAGAAGAAGGATCCTCCTGGATTCTCCGAACAGGAGAACCGCCTGATCGACGCGCTCATCGG AATCCAAGGCCGAGGAAAATCTGCCACTCCTCTGCAGCTCAACGAAGTAGAACAAGGAGTCAGAGTGTTGGAAGGCCTTGAAGGATTGCCCGAGCCGACA GAATCGAACCTGATTGAAGGGAAGTGGCAATTGATGTTTACAACTAGGCCAGGAACTGCATCCCCAATTCAGAGAACATTCGTGGGGGTTGATTTCTTCA AAGTTTTTCAAGAGGTCTACCTTCAAACTGATGATCCCCGAGTTTCGAACATCGTAGTATTCTCTGATGCAGTTGGTGAGCTCAAAGTCGAGGCAGCAGC ATCAATTGCTAATGGGAAACGGGTCCTTTTCCGATTCGATAAAGCAGCTTTCTCGTTCAAGTTCCTGCCGTTCAAAGTTCCCTATCCAGTGCCATTCAGG CTTCTTGGGGACGAAGCAAAGGGTTGGCTAGACACTACCTACTTGTCCCCCACCGGAAACCTTCGAATCTCGAGAGGAAACAAGGGCACCACATTTGTGC TCCAAAAGGAGACCGAGCCTCGGCAGAAACTGCTGGCAGCCATTTCTTCTGGGAAACAAGTTGCAGAGGCGATCGACGAATTTCTACAATCGAAGAAGGA TGTAGTCAAAGGAGAACAGCAATTGCTCGAAGGTGAATGGCGAATGGTCTGGAGTTCTCAGACCGAAACAGATAGTTGGATCGAGAATGCTGCCAATGGA CTCATGGGAAACCAGATAGTGAAAAGCGACGGACAGATGAAGTTTGTAGTAGACATGCTGCTTGGACTCAGATTCTCCATGTCCGGAACATACGAGAAGT CGAGTAGCGAAAACAACACATACAATGTGATCATGGACGATGCAGCCATCATCGGAGGTGCGTTTGGCTACCCTGTAGAGCTTGGGACCAAGATGGACCT AGAGTTGCTATACACAGACAACAAAGTGAGAATCAGCAGAGGGTACAATCGAATTCTCTTTGTACACGTACGGATCGATGGAGGAACAGTGTAA
AA sequence Show only first row Show all	>Lus10012100 pacid=23154987 polypeptide=Lus10012100 locus=Lus10012100.g ID=Lus10012100.BGIv1.0 annot-version=v1.0 MAAVITGALALSPLLNNNASHPTSFHGRRIRSHFRCHSSILNQQEEKKKDPPGFSEQENRLIDALIGIQGRGKSATPLQLNEVEQGVRVLEGLEGLPEPT ESNLIEGKWQLMFTTRPGTASPIQRTFVGVDFFKVFQEVYLQTDDPRVSNIVVFSDAVGELKVEAAASIANGKRVLFRFDKAAFSFKFLPFKVPYPVPFR LLGDEAKGWLDTTYLSPTGNLRISRGNKGTTFVLQKETEPRQKLLAAISSGKQVAEAIDEFLQSKKDVVKGEQQLLEGEWRMVWSSQTETDSWIENAANG LMGNQIVKSDGQMKFVVDMLLGLRFSMSGTYEKSSSENNTYNVIMDDAAIIGGAFGYPVELGTKMDLELLYTDNKVRISRGYNRILFVHVRIDGGTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51110			Plastid-lipid associated prote...		Lus10012100 [exp]	0	1
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	2.6	0.9585
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Lus10023436 [exp]	4.9	0.9561
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	5.9	0.9417
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Lus10000828 [exp]	6.6	0.9431
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	6.9	0.9445
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	7.3	0.9400
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	11.5	0.9290
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10002906 [exp]	12.4	0.9299
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	12.8	0.9273
AT1G79040		PSBR	photosystem II subunit R (.1)		Lus10042461 [exp]	15.2	0.9323

Compare expression of checked genes

Lus10012100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.