Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23200 471 / 2e-153 Protein kinase superfamily protein (.1) AT5G61350 466 / 2e-151 Protein kinase superfamily protein (.1) AT4G39110 461 / 2e-149 Malectin/receptor-like protein kinase family protein (.1) AT5G59700 452 / 1e-146 Protein kinase superfamily protein (.1) AT2G21480 451 / 1e-145 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 450 / 3e-145 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 448 / 8e-145 HERK1 hercules receptor kinase 1 (.1) AT2G39360 427 / 6e-137 Protein kinase superfamily protein (.1) AT1G30570 412 / 5e-131 HERK2 hercules receptor kinase 2 (.1) AT5G28680 405 / 6e-128 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010443 [exp] 1232 / 0 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10028140 [exp] 490 / 7e-161 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 481 / 2e-157 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 448 / 1e-144 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 442 / 8e-143 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 437 / 7e-140 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 433 / 3e-138 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 429 / 4e-137 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10000562 [exp] 404 / 3e-127 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144100 [exp] 651 / 0 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143700 [exp] 635 / 0 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144200 [exp] 632 / 0 AT5G24010 558 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143200 [exp] 514 / 5e-170 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 476 / 1e-155 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 469 / 7e-153 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 462 / 4e-150 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 459 / 1e-148 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 458 / 2e-148 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 444 / 3e-143 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10012101 pacid=23154954 polypeptide=Lus10012101 locus=Lus10012101.g ID=Lus10012101.BGIv1.0 annot-version=v1.0 ATGGAGAAACCCAGCTCTAACCACTACAGCCTTCTCTATCTCCTCCTCCCCATCTACCTCCAATTCCTCTGTTTCTTCTCACTCCCTTCCTCCTCCCACG CCGCCGATTCTCCTCCAACCCATCTCCGCATCAACTGCGGGTCCCCATCCGACGTCGATGACGCCAATTATGGAGCCTTCACCGCCGACAAATCTCCCAA ATTCTTCCGCATCAGCGAAGGCAGCAATACGGCTACGGCTACTCCAGCAGGAACCACAACTTCTCTGTACCAAACGGCCAGATTCTTCCGACAACACAGT CGCTACACATTCGAGGTGGCTCCTAACTCCACGTATTATCTCCTCCGCCTCCATTTCGCCGCCTTCTATACTCAAAGTGCCAACCTCTACGCCGCCGTCT TCAACGTCTCCACTTCCAATAAAGCACTCCTCCGCAACTTCTCCCCGTCAAATTCAACGGTGGTGGTTTCAGAATTCTACGTCCCCGTCGCCAATTCGTC GGAATTTAAGATCTACTTTATCCCAGCTGAAACAAACAATACCTCATCACCGTCGTCTCCTCCTCTGGCTTTTGTGAACGCCATCGAATTCCTACGTCTT CCCCCCAACTTGCTCGCCGACAATCAGAGCCAAGCTTTCCGCACTCTTTACAGAGTCGATATCGGCGGCGGCGGCGGTCGAGATGATTACATCAACAATT TGGGGAGGCAATGGAGTCCGGACAAGGACTTTTATACAACTCCTTCAGACGATACGAGCAAAAATAAGTCGATGGGGCCTTCACCAGACTTGGATGAAGA CCTCCCTCCACTGTCCATCTTGAAAAGCTGCAGATTCGAGAACTCGGCCGTCGTTGGGCCGAAGCCCTCGAACCTAACCTGGAGATTTCAAGTGAAGAGG AACAGTAAGCAATTCGTTCGCCTCTATTTTTTCAATTGCGAAGGTGACGGACCTGCAGATTTCAATATCTACATCAGCAATTTGATCAAGTCTAGGGTTG CCACCTTCAAGGAACCGGACTACCAAGAATATGTGACGGATTCTGATAGTTCTGGATACCTAAACATCAGCATCATCCCTGAGATCCCTACAGATGATGG GATGAACAAAACCGCTTATCTGAATGCTCTGGAAATAATGGAGTTTCTACCAAACACAACGGTGAACGACTCGGATTTTGTTGACGAAATCCATCAGAAA TTCAATCTTAATCTCGTGATTGCGCTTTCAGTTGCTGGGGGTTTGATATTTGCTCTGATTTGTTCGATCGTGTTAGTGTTGATGTTTAGGCGGAGGAAGA AGAACAATAATAATAAGAAGAATTCGTCTGATTCTGTGAAGAAATCGAAATCTTCAACAGCCGCCAGTGGGAAGAAGTTCCACAGCTGGATGACGGTGAA AAATAATACCACTAGCCATGGCTCGCCTCTCCCGGAGCTGAATCTAAAGCTCAAGATGCCATTAGCTGAAATCATGGCTGCAACTGACAATTTCAACCCG GACAGATTGATCGGATCGGGCGGGTTCGGGAAAGTATACGCAGGAAAGCTTATGAGTGGCGTGAAAGTCGCGGTAAAGAGGAGCGAAGAATCGGGTCATG GGCAAGGTCTACCCGAATTCCACACAGAGGTTCTAGTCCTTTCCAAGATCCGCCATAGGCATCTGGTTTCCTTGATCGGGTATTGTGACGACGGAGATGA GATGATTCTCGTTTACGAGTTCATGAAGAACGGAACTCTCAGGGAATATCTCTACACCTCGGAACACGATCCTCCTCCGCCATTATTGAATTGGAAGCAA AGGCTTGAGATCTGCATAGGATCGGCGAAAGGTCTGCACTACCTTCACACGGGATCGGACGGAGGGATCATCCACAGGGATGTGAAGACTACAAACATAT TGCTGGATGATAACTTGGTACCGAAAGTGGCGGATTTCGGGCTATCTCAATCGGGTCCGCCCGATCCGGATCACCATACCATGGCATTAAAAGGAAGCTT CGGTTATCTTGATCCAGAATTCTTCAGGACGCTTCAATTGACTGACAAATCCGACGTGTACTCGTTCGGAGTGGTGATGCTGGAAGTGCTGTGCGCCAGG CCTCCGATTGTGAACTCATCCAACGCCGAGGAGATCAACTTGGCGGAGTGGGGGATGTCGTGGCAGAAGAAAGGGGAGATTGAGAAGATTGTTGATCCGT TAATTGCGGGGGAGATAAATCCGAGTTCGTTGAGGAAATATGTTGAGGTTGCTGAGAAATGCTTGAGGGCGAATGGAGTGGAGAGGCCTGCAATGTTGGA TGTTTGCTGGGACTTGGAGTACGCGTTGCAGTTGCAGAAGAGTACGGTGAAGAGAGAGCCGTCGGAAGATAGTATGACGACGATGACCGATGGTGGGTAC TCCGGCAATGTCATAAATAATATGGCGGTTGATAATAGCTTCACCGTTGATGAATGTGAAGAGGACTTTTCAATCGGTGGAGATGGTTTCGGTGATTCTG TGATTATGGATAGTGAAATATTTTCCCAGCATAGGATTGATGGATCGGCGGTGGATAGATAA
AA sequence Show only first row Show all	>Lus10012101 pacid=23154954 polypeptide=Lus10012101 locus=Lus10012101.g ID=Lus10012101.BGIv1.0 annot-version=v1.0 MEKPSSNHYSLLYLLLPIYLQFLCFFSLPSSSHAADSPPTHLRINCGSPSDVDDANYGAFTADKSPKFFRISEGSNTATATPAGTTTSLYQTARFFRQHS RYTFEVAPNSTYYLLRLHFAAFYTQSANLYAAVFNVSTSNKALLRNFSPSNSTVVVSEFYVPVANSSEFKIYFIPAETNNTSSPSSPPLAFVNAIEFLRL PPNLLADNQSQAFRTLYRVDIGGGGGRDDYINNLGRQWSPDKDFYTTPSDDTSKNKSMGPSPDLDEDLPPLSILKSCRFENSAVVGPKPSNLTWRFQVKR NSKQFVRLYFFNCEGDGPADFNIYISNLIKSRVATFKEPDYQEYVTDSDSSGYLNISIIPEIPTDDGMNKTAYLNALEIMEFLPNTTVNDSDFVDEIHQK FNLNLVIALSVAGGLIFALICSIVLVLMFRRRKKNNNNKKNSSDSVKKSKSSTAASGKKFHSWMTVKNNTTSHGSPLPELNLKLKMPLAEIMAATDNFNP DRLIGSGGFGKVYAGKLMSGVKVAVKRSEESGHGQGLPEFHTEVLVLSKIRHRHLVSLIGYCDDGDEMILVYEFMKNGTLREYLYTSEHDPPPPLLNWKQ RLEICIGSAKGLHYLHTGSDGGIIHRDVKTTNILLDDNLVPKVADFGLSQSGPPDPDHHTMALKGSFGYLDPEFFRTLQLTDKSDVYSFGVVMLEVLCAR PPIVNSSNAEEINLAEWGMSWQKKGEIEKIVDPLIAGEINPSSLRKYVEVAEKCLRANGVERPAMLDVCWDLEYALQLQKSTVKREPSEDSMTTMTDGGY SGNVINNMAVDNSFTVDECEEDFSIGGDGFGDSVIMDSEIFSQHRIDGSAVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	1.0	0.9243
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	3.7	0.8827
AT4G34950			Major facilitator superfamily ...		Lus10034491 [exp]	5.3	0.8491
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	5.9	0.8336
AT1G12380			unknown protein		Lus10032194 [exp]	6.7	0.8200
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	8.5	0.8371
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	9.6	0.8600
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	12.0	0.8252
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	12.4	0.8381
AT5G40382			Cytochrome c oxidase subunit V...		Lus10008765 [exp]	14.7	0.8319

Compare expression of checked genes

Lus10012101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.