Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10180 1158 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 472 / 2e-149 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G21380 337 / 1e-97 Kinesin motor family protein (.1) AT4G39050 331 / 1e-95 Kinesin motor family protein (.1) AT1G21730 322 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 322 / 5e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 321 / 2e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18370 291 / 3e-82 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 279 / 2e-78 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) AT5G66310 276 / 2e-76 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010441 [exp] 1935 / 0 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007725 [exp] 464 / 8e-146 AT1G59540 906 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018661 [exp] 457 / 2e-143 AT1G59540 924 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10041958 [exp] 336 / 7e-98 AT4G39050 1202 / 0.0 Kinesin motor family protein (.1) Lus10017969 [exp] 336 / 4e-97 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10018145 [exp] 325 / 6e-93 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025688 [exp] 324 / 1e-92 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015448 [exp] 305 / 1e-91 AT3G51150 558 / 0.0 ATP binding microtubule motor family protein (.1.2) Lus10033920 [exp] 308 / 3e-88 AT3G51150 578 / 0.0 ATP binding microtubule motor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G040700 [exp] 1447 / 0 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 461 / 3e-145 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G122100 [exp] 346 / 9e-101 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.004G161100 [exp] 342 / 3e-99 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.006G194900 [exp] 328 / 8e-95 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G060400 [exp] 327 / 2e-94 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 320 / 4e-91 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G027600 [exp] 296 / 3e-84 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G136600 [exp] 296 / 6e-84 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.012G054400 [exp] 295 / 2e-83 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10012103 pacid=23154995 polypeptide=Lus10012103 locus=Lus10012103.g ID=Lus10012103.BGIv1.0 annot-version=v1.0 ATGGAGCGCATTCACGTTACAGTTCGAGCAAGGCCACTATCGCCGGAGGACGCTAAGGCCAGCCCCTGGAGAGTTTCCGGAAACTCCGTCTTCATCCCTA ACCACAGCACCAAGTTCGAGTTCGACCGGGTGTTTGGAGAAGACTCCAAGACCGAAGAGATCTACAGAGCGCGGACTAAGGATATCGTTGCTGCAGCTAT TCGCGGATTCAACGGTACTGTATTCGCTTATGGACAAACAAACAGCGGAAAGACGCATACGATGCGAGGATCATCGGCTGAGCTCGGTGTCATCCCTCTT GCCGTGCATGATGTTTTTAACATAATACACGAGGATCTGAGTCGAGAATTTCTCCTACGGATGTCGTATTTGGAGATCTACAATGAGGATATAAACGACT TATTAGCACCTGAGCACCGAAAGCTGCAGATTCATGAAAATCTGGAGCGTGGAATATATGTTGCTGGTTTGAGGGAAGAGATTGTTACATCTCCGCAACA AGTCCTTGATCTCATGCAATTTGGAGAAGCACATAGGCATATTGGTGAAACAAATATGAACACATACAGCAGTAGGTCTCACACCATCTTTCGCATGATA ATTGAGAGTCGGGATAGAACTGAGGATGACGACATGGGTAGTGCTTGTGATGCTGTACGCGTATCAGTCTTGAATTTGGTGGACCTTGCTGGTTCAGAAC GTGCTGCAAAAACTGGCGCTGAAGGTGTTCGCCTTAAAGAAGGTTCGCACATCAATAAGAGCCTTATGACGCTGGGAACTGTGATAAAAAAACTGAGTGA GGGTGCTGAAAGCCAAGGGGGTCATGTTCCTTATCGAGATAGTAAACTTACGCGGATTTTACAACCAGCTTTAGGAGGCAATGCAAATACAGCAATAATA TGCAATATTACTCTCGCTCAGATTCATGCAGATGAAACAAAAAGTAGTCTTCAGTTTTCCAGCAGGGCATTACGGATAAAAAATTGTGCTTGTGTGAATG AGGTGCTGACTGATGCTGCCCTCTTAAAGCGTCAGAAAAAGGAAATTGAGGAACTGAGAGCAAAATTGATGGGTACTCACTCAGAGCATCAGGAAGATGA GATTCTCAGTCTACGAAACACACTATTACAGTCAGAACTGGAGAGAGAACGGGTAACTCTTGAACTGGAAGAGGAAAAAAGAGTCCAAGCGGAGCGCGAA AAGCTTTTGCAAGAGCAAGCGAAGAAAATTGAAAGCCTGTCATCCATGGTTCTCTATTCCAATCGAGACGATAACTGCAACCAGCTTAAGAAGGGAAAAA GACGGGACACATGGTGTCCGAGTAATTTTTCAAGAGTAGCACTCCAAGAGGTGGATGCTAATTCGCAATCAAGGCTTTCCAATATCAAGCCCATGAGAGG TAGAAGTGATGTGGGACAACTTGTTTCTTTTGAAGAATTGATAAGTGAAGAAAAGGTTGGTGATGACCTCTCTCAGCCACAATCAGCAGCTAGCAATAGT GCATCAGAGGACTGCACTCTTCCTGATCCATGTGCTTTGCTGCATGTTACCAGCAGGAGGAAGGGGCAGTCAAGAAAGAAAGCTTCTCTTTCGGAAGGCC ATGATTTGAATGAAATTCAAGAGGAGTATGAGGAGTTACTCCTGGAATCTGAAACTCAGAGAACTGTGAGCGAGGTTCTGATAGATTGCTTGAGAAGACA GCTGGCTGACAGTGATAATTCACTCGCTAGGATGCAGAGCGACCTTGCCTTTCCTCATGATCCCGAGTCTAGTAATCATAAAGAGAAGAGTATAAGTATC AGGGAGTCCGAGGCCATTCTTATAATTAAGCAGCTACAAGAAAAGATTGAGATGTTAGAGATGGATAAAAATTCAAGTCAACAAAATCTGGACAGCGTTG TCGATCTAGCAACAGAGCAAAGTCTTTACGCAAGGGAGAAGTTTGAAGAGCTACATCAAGAGTTTGACAAGGCCAGAGAAGAGGCCAGGCTTGCTTCTGA ACAGCTTGATGCAGGAATGAGTGATCTTCGAATGGAGATTGAAGAAATATCAAGTGAAGTTGAGGAAGCAAACATTGTCGTCCAGACTGCGTTTTCACTT TTAGAAGAATCTTTCCTGAGTTTCTCAATGATCTCTGATGTATTTAGCGACTTCAGGAAGTCAATGCTCGAGAATTCTGACAAACAAAGCTCAATCATTA GTGACCATGCTGAACTATGTGACTGCATCAGGCAGAAGCTCGCAGTAGCCGAAAATGAGAAGCTTTTACTGACCGTTAAATGTGCTGATGTCGAGAGACA TCTACAAGAAGCGAGGCAGGATGCTCAAAAGCAGGAAGATGCCCTGGCAGCACTATCAGAAGATGTGAATTATGAAAAGGAAGAATACATCTCACGGATT CTAAATCTCGAAAAGGAAGTATCTAATTTATCTTCTTGTTCCTTGGCAAAGGAGAAGGAGAGCTTGAGAAAAGACCTCGAGAAAACAAAAACGAGACTGA AAGAGATTGAGTCCAAACTGAAGAATGTGGTTCAAGAGAAAACGAAACTTGAGGGCGAGAAAGTGCTTGCTGAGAAAGAGGTAAAGCGATTGCATGGTCA GAAGAATCTGCTTCAGCGAGACATTAGCAAGCGTGATTCTATAATGGATAGGAGTTCTAAAGTTGGGGACCCGAGAAAGCCGAAGGGCCTAACGAGTTCA TTTGACCAGACAATGCAGGAAGACTACAGAAAACTTGAAGTTCTTGCATTTGAGATGGAAGAAGCTATTGCTTCCCTAGAGGAGCAACTTGAAGAAGTAC GTAATGAAAAGGAAACAATAACACAGAGAAGTGAAGATCTGTCCTCAGACTTAGTAACCATGTCCGAGAGGTTCAATGCTTCTAATGCTGAGTTGTGCTC GTTGCAACAAGAGATTTTGGGGCTCAGACTCAAGTTGGAAGCGTCTACTTCTGACCAGCAAGAAATGGAGAACTCCATCAAGCTCTTGCTACAAGAAAAG GAAGACTTGGCACTGCAACTCAGTGATTCCCTTCTCGAAATGGAGGAGGAAAAGGCTATTTGGTTTTCGAAAGAGAAAGCGTCACTTGCAACCATTGAAG AGAAAAGGAAATTACACAATGAGGAAATCACCACATTGTACAAAGCACTGTCAGAAGTACAAGGCGAACTGGAATCCTGCCAAGAAGAATACAAGGTTCT CAAGGAAACACTGTTGAAGAAGGAAGATGAACTAGCGGAGAAATGCAGTGAATTGTCTCGAGATCACGACGAGAGAAGATCAAACATTGAGAGCGACAGA CACAAAGTGACAGAGCAGCTGGACTCAGAGTTACCATCTGGAGAATCACCTTGTGTTTCTGGCGAAGCGAATACCAATAACAACGATGAGAATCTACCTA CACTCAAGGAGATAGATGCTGAGCAACAGCTAGTTGAAGACCTAGAGAATCTCCGCACCCAGCTGGCTACGGTCATGACAGAGAAGGAATCAATGTTAAC TCAGATGGAAGGGTACCAGAGGAATGCAGCGGAAGTAGACTTCGTAAGAGAACACTGTGACAACATGTTAAAAGGCGCGAGAGCTCAAATCGAGGAACTG AGCGGAAGGATTGTCAGCCTGGAGGCCAAGATGCAGTCGGACTACACCGCGACGGTCAACGAGAAGACTAAATTGAGAATGATTGCGAGGGGGACGCAAG CGAAACAGGAGGCGTTTGGTTTCAGGTACAGAGAAGCCGTTAGGGAGTTGGAGGTTATGCACAAGAAATTCGAAGAGGCTTCGAAGAAGCTTAAAGAGAA GTTGGCATTCTATGTGAAGGAAAACCTGGAACTCAAGAAACAACTATTAATTTCCTCTTCTTCTGTATAA
AA sequence Show only first row Show all	>Lus10012103 pacid=23154995 polypeptide=Lus10012103 locus=Lus10012103.g ID=Lus10012103.BGIv1.0 annot-version=v1.0 MERIHVTVRARPLSPEDAKASPWRVSGNSVFIPNHSTKFEFDRVFGEDSKTEEIYRARTKDIVAAAIRGFNGTVFAYGQTNSGKTHTMRGSSAELGVIPL AVHDVFNIIHEDLSREFLLRMSYLEIYNEDINDLLAPEHRKLQIHENLERGIYVAGLREEIVTSPQQVLDLMQFGEAHRHIGETNMNTYSSRSHTIFRMI IESRDRTEDDDMGSACDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPALGGNANTAII CNITLAQIHADETKSSLQFSSRALRIKNCACVNEVLTDAALLKRQKKEIEELRAKLMGTHSEHQEDEILSLRNTLLQSELERERVTLELEEEKRVQAERE KLLQEQAKKIESLSSMVLYSNRDDNCNQLKKGKRRDTWCPSNFSRVALQEVDANSQSRLSNIKPMRGRSDVGQLVSFEELISEEKVGDDLSQPQSAASNS ASEDCTLPDPCALLHVTSRRKGQSRKKASLSEGHDLNEIQEEYEELLLESETQRTVSEVLIDCLRRQLADSDNSLARMQSDLAFPHDPESSNHKEKSISI RESEAILIIKQLQEKIEMLEMDKNSSQQNLDSVVDLATEQSLYAREKFEELHQEFDKAREEARLASEQLDAGMSDLRMEIEEISSEVEEANIVVQTAFSL LEESFLSFSMISDVFSDFRKSMLENSDKQSSIISDHAELCDCIRQKLAVAENEKLLLTVKCADVERHLQEARQDAQKQEDALAALSEDVNYEKEEYISRI LNLEKEVSNLSSCSLAKEKESLRKDLEKTKTRLKEIESKLKNVVQEKTKLEGEKVLAEKEVKRLHGQKNLLQRDISKRDSIMDRSSKVGDPRKPKGLTSS FDQTMQEDYRKLEVLAFEMEEAIASLEEQLEEVRNEKETITQRSEDLSSDLVTMSERFNASNAELCSLQQEILGLRLKLEASTSDQQEMENSIKLLLQEK EDLALQLSDSLLEMEEEKAIWFSKEKASLATIEEKRKLHNEEITTLYKALSEVQGELESCQEEYKVLKETLLKKEDELAEKCSELSRDHDERRSNIESDR HKVTEQLDSELPSGESPCVSGEANTNNNDENLPTLKEIDAEQQLVEDLENLRTQLATVMTEKESMLTQMEGYQRNAAEVDFVREHCDNMLKGARAQIEEL SGRIVSLEAKMQSDYTATVNEKTKLRMIARGTQAKQEAFGFRYREAVRELEVMHKKFEEASKKLKEKLAFYVKENLELKKQLLISSSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	0	1
AT2G04235			unknown protein		Lus10016054 [exp]	2.0	0.9715
AT2G07170			ARM repeat superfamily protein...		Lus10027590 [exp]	2.4	0.9735
AT1G07970			unknown protein		Lus10023345 [exp]	3.9	0.9500
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	4.2	0.9562
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	4.9	0.9521
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	5.5	0.9570
AT2G36200			P-loop containing nucleoside t...		Lus10017016 [exp]	6.7	0.9529
AT3G10180			P-loop containing nucleoside t...		Lus10010441 [exp]	7.2	0.9507
AT2G36200			P-loop containing nucleoside t...		Lus10021340 [exp]	8.5	0.9621
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	9.3	0.9345

Compare expression of checked genes

Lus10012103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.