Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40950 342 / 1e-106 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G10800 255 / 1e-74 bZIP BZIP28 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 248 / 2e-72 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT5G11260 53 / 8e-08 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 47 / 3e-06 bZIP HYH HY5-homolog (.1.2.3.4) AT1G06850 47 / 2e-05 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G40620 45 / 0.0002 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G42380 44 / 0.0003 bZIP ATBZIP34 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2) AT1G06070 44 / 0.0003 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT4G38900 43 / 0.0007 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010440 [exp] 1059 / 0 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10038995 [exp] 484 / 3e-161 AT2G40950 421 / 2e-137 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10027290 [exp] 462 / 1e-152 AT2G40950 429 / 2e-140 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 50 / 1e-06 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002900 [exp] 49 / 3e-06 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008150 [exp] 47 / 2e-05 AT1G06070 346 / 4e-119 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10037750 [exp] 45 / 2e-05 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10019376 [exp] 47 / 5e-05 AT1G06070 384 / 6e-131 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10042211 [exp] 46 / 0.0001 AT2G40620 277 / 4e-91 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032400 [exp] 387 / 1e-123 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G034500 [exp] 369 / 2e-116 AT2G40950 475 / 1e-157 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G251800 [exp] 53 / 6e-08 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 52 / 1e-06 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 50 / 1e-06 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 50 / 2e-06 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.015G047700 [exp] 48 / 7e-06 AT5G60830 86 / 8e-21 basic leucine-zipper 70 (.1) Potri.005G257900 [exp] 47 / 4e-05 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.013G156900 [exp] 46 / 7e-05 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G125400 [exp] 46 / 0.0001 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10012104 pacid=23155012 polypeptide=Lus10012104 locus=Lus10012104.g ID=Lus10012104.BGIv1.0 annot-version=v1.0 ATGAATACGTCTTTACTTGGCTGTTTTATAGTTTGCGTCAAGCAAACGGCTACTCGATGTTTGCTTCCTTCTTCCTTCTTCTTATTTAATATANNNNNNN NNNACAAAACAGTGGCTGCTCCCCCCGTCGATCCAGTCGGCTTCTTCACCTCCGATCACGACGTAGGAGGTGGATTGGCCTCCGATCTAAATTCCTTCAA TTTCGACGAGAATTTCGACATCGGCATCGACTTCGACGACCTAGACTCCCTCTACTTCCCTTCCGAGACCGAGTCCTTCCTTCTCCCTGACTCATCCCCC GCTGGATCGCCGAACAATGACAGTGCTGCCGCTGCTGCGGAGTCGGAGAATTCAGGAGTTTCAGGCGACGTCGTCGGGAAGTACTTCAACTGCGACTCCG ATGAAGGGAGCACCGCGATGGCGGCGGCGAATTGTCGCGTGGATTCGTCTCCTGCGTCATCTCACGGATCTGGCAACGGGAGATCGACAGTTTCCGATAC GGAGGCGGCGTGTTGCTCGCCTGATTCGGGGAGTAGCGAGAAGAAGAAGAAGAATGTTGTTAAGGATGAAGGGGAAGGGAACGCGAAGAGGAAGAAGGAA TCCGGGAATGGGGAGCAATTGAGGAGGCAGAAATGCAGGGTGTTGGAGTTTCCGAGCTCGGTTTCGAAAGAGAGCGACGATTCGAAAGCCGAGTCTGGAA GCGTGGGGCAGCAGTTTGGTGGAGAAGACGAGAAAAAGAAGGCGAGGCTGATGAGGAATAGGGAGAGTGCTCAGCTGTCAAGGCAGAGGAAGAAGCATTA CGTGGAAGAGCTGGAGGATAAGGTGAGAGCTATGCATTCCACTATAACTGATTTGAATGGGAAGATATCGTATTTCATGGCTGAGAATGCTAGCTTGAGA CACCAGTTGGGGGGTGGAAATGGAGGGATGTGTCCTCCTCCCGGTATGTATCCTCCTCCGATGACACCAATGCCGTATCCATGGATGCCCTGTGCTCCTT ATGTGATCAAGCCTCAGGGTTCTCAGGTGCCATTGGTTCCGATTCCTAGATTGAAACCTCAGCAGCATCAGCAGCAGCCCGCGCCGAAATCGAAGAAGGG TACTGGGGAGGGGAAGAGGTCTGAAACCAGGACTAAGAAAGTTGCTAGTGTTAGTTTTCTAGGGCTGCTGTTTTTCGTTCTGATGTTTGGTGGGTTAGTG CCGCTAGTTAATGTTAAGTATGGAGGGGTAAGTGATAGTAATGACGCGGTAAACAAGTGGTTTGGTGGCAGTGGAGGTAGGTTTTCTGATCAGAATCTCC CTGGGAGAGTGTTGGTAGTTGATGGACATAGTAATAGAACCCGTGGGAGCATCAATGGTGGTATGCACTGCGAGAAAGGAGTGAAAGGTCGTCTAGAATG TGATAAGTCGAGGGAGGGAGGTCCCAAGAATGTACCAAAAGGAAGTGGCTTTACGAGTACTGATAACTCGACTGAGCAGCTTCATGCTTCTCTATATGTG CCGAGGAATGATAAGCTTGTGAAAATTGATGGGAACTTGATAATTCACTCTGTCCTTGCTAGCGAGAAAACGAAGCGATCCCATGCCAGTGCCACGTCTA CCGAGGCGAAACCTAAGGAAACGAGTCTAGCAGTCTCAAAGTATCTTTCGGCAGCTTTAGCTATCCCTGATGGAACCACGAGGAGGAGGCTGTACAGGAC TACTACCGAACAGCAGAAGGCAATTGGCGGTTCTCGGTCAGCTGATAATTTAAAAGAGCAGTTCAAGTCCTCTGCAGCTGATGGTAAACTGCAGCAGTGG TTCCACCAAGGTCTTGCTGGGCCAATGCTGAGTTCGGGAGTGTGCAGCGAAGTGTTCCAGTTCGACGTATCCCCATCTCCAGGCGCCATCGTTACAGCTT CCTCGGTAACCAATCTCACCAACAAACCCCAGAATGCAACTGCTGATCATGCTCCTCCTTCCGACAAGAAGAAACACAGGAGGATCCTCCACGGCCTCCC GGTACCCTTCTCGACATCCGATCTTAACACCACCGGAGACCAACACCGCCAGAAAGGAGGGCAGAAGAACGAGACTTCGTACAATAATCCAGCAGCAGCC TCTTCTTCGATGGTCGTATCAGTGCTCGTGGATCCACGAGAAGTCGGGGACAGCGACATGGTTGCACCGAAGAAGTCGCTGTCTCGAGTCTTTGTAGTTG TGCTCGTGGACAGTGTGAAGTATGTTACCTACTCGTGCGTGCTTCCACGGTCCGGCCCTCACTTGGTAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10012104 pacid=23155012 polypeptide=Lus10012104 locus=Lus10012104.g ID=Lus10012104.BGIv1.0 annot-version=v1.0 MNTSLLGCFIVCVKQTATRCLLPSSFFLFNIXXXXKTVAAPPVDPVGFFTSDHDVGGGLASDLNSFNFDENFDIGIDFDDLDSLYFPSETESFLLPDSSP AGSPNNDSAAAAAESENSGVSGDVVGKYFNCDSDEGSTAMAAANCRVDSSPASSHGSGNGRSTVSDTEAACCSPDSGSSEKKKKNVVKDEGEGNAKRKKE SGNGEQLRRQKCRVLEFPSSVSKESDDSKAESGSVGQQFGGEDEKKKARLMRNRESAQLSRQRKKHYVEELEDKVRAMHSTITDLNGKISYFMAENASLR HQLGGGNGGMCPPPGMYPPPMTPMPYPWMPCAPYVIKPQGSQVPLVPIPRLKPQQHQQQPAPKSKKGTGEGKRSETRTKKVASVSFLGLLFFVLMFGGLV PLVNVKYGGVSDSNDAVNKWFGGSGGRFSDQNLPGRVLVVDGHSNRTRGSINGGMHCEKGVKGRLECDKSREGGPKNVPKGSGFTSTDNSTEQLHASLYV PRNDKLVKIDGNLIIHSVLASEKTKRSHASATSTEAKPKETSLAVSKYLSAALAIPDGTTRRRLYRTTTEQQKAIGGSRSADNLKEQFKSSAADGKLQQW FHQGLAGPMLSSGVCSEVFQFDVSPSPGAIVTASSVTNLTNKPQNATADHAPPSDKKKHRRILHGLPVPFSTSDLNTTGDQHRQKGGQKNETSYNNPAAA SSSMVVSVLVDPREVGDSDMVAPKKSLSRVFVVVLVDSVKYVTYSCVLPRSGPHLVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	2.8	0.9163
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	3.2	0.9121
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	4.5	0.8778
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	5.7	0.8868
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	7.5	0.8722
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	8.9	0.8675
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	9.6	0.8959
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	10.4	0.8706
AT4G12340			copper ion binding (.1)		Lus10024588 [exp]	11.5	0.8648
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	12.5	0.8623

Compare expression of checked genes

Lus10012104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.