Plant FIBer expression Database

Lus10012105 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56820 193 / 6e-62 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010438
[exp]
325 / 3e-113 AT3G56820 213 / 1e-69 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G026300
[exp]
213 / 2e-69 AT3G56820 208 / 5e-68 unknown protein
PFAM info
Representative CDS sequence
>Lus10012105 pacid=23154916 polypeptide=Lus10012105 locus=Lus10012105.g ID=Lus10012105.BGIv1.0 annot-version=v1.0
ATGGCCAACCCTAGAAGAAGCTCGTACTCCGTCAACATCAACGACGACGGCGCCGGAATCCAACAATCTTCCTCATCAGCATCACCTTCTACCTCTTCTT
TCTTCTCATCATCTCCTCTATTGATCTCTCTCAAGCACTGGCTGAAGAGGCCGCACGCCGTCCCTTTCTTGCTCTCAGCCTTCCTCCTCCTCACATGGCT
CTCCCTCCTCCTCCAGCAGCGATCTTCACATTCTTCTTCGTTAGCTGCTCGGATCGGAGACGGCCGGAAGTATGACGACGATCGGGATGCGAATTTGTTC
CGGTTTAGATCTGGATCCGGTTTCGGGAAGGACAAGCGTGGATGGCTCCTCGAACCGGTCTCTCTCGCCCTTGAACACGGCCTTAAAGGTGGAGCTGGTT
CTTGTGCTTCGGTTCATGTTGGAGAAATCCGACCCGGTGCACTGAGGGGAAACCATAGGCACAATGCTTGCAATGAGACGTTGGTAATTTGGGGCGCCAA
GACGTTGTTCAGGTTGGAGAACCACCAGATCGTCGATACGGGCTTTGCAGAAGTGATTGTCGAAAGGGATGAAGTGGCTGTAGCCACCAGTTCAAGCGGG
ACAGCTCATGCCCTCGTAAATATCGATTCGCTACACAGCACGTTCATCATTGGGTGCCAAGACTGTATAACTGACCATAGCAGCAGCAAGAACTCCTCCT
CGCACACTGACTACAAAGTTTGGCCCGACCTCTGA
AA sequence
>Lus10012105 pacid=23154916 polypeptide=Lus10012105 locus=Lus10012105.g ID=Lus10012105.BGIv1.0 annot-version=v1.0
MANPRRSSYSVNINDDGAGIQQSSSSASPSTSSFFSSSPLLISLKHWLKRPHAVPFLLSAFLLLTWLSLLLQQRSSHSSSLAARIGDGRKYDDDRDANLF
RFRSGSGFGKDKRGWLLEPVSLALEHGLKGGAGSCASVHVGEIRPGALRGNHRHNACNETLVIWGAKTLFRLENHQIVDTGFAEVIVERDEVAVATSSSG
TAHALVNIDSLHSTFIIGCQDCITDHSSSKNSSSHTDYKVWPDL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56820 unknown protein Lus10012105
[exp]
0 1
AT4G34490 ATCAP1 cyclase associated protein 1 (... Lus10026338
[exp]
4.4 0.8898
AT5G53750 CBS domain-containing protein ... Lus10029665
[exp]
6.0 0.8717
AT5G56350 Pyruvate kinase family protein... Lus10010329
[exp]
9.5 0.8672
AT5G42660 Protein of unknown function (D... Lus10032311
[exp]
10.6 0.8598
AT3G50390 Transducin/WD40 repeat-like su... Lus10022475
[exp]
11.7 0.8026
AT3G28480 Oxoglutarate/iron-dependent ox... Lus10032183
[exp]
13.5 0.8197
AT4G35020 ROP6, ARAC3, RH... RHO-RELATED PROTEIN FROM PLANT... Lus10002181
[exp]
15.3 0.8673
AT3G56820 unknown protein Lus10010438
[exp]
17.5 0.8539
AT2G29550 TUB7 tubulin beta-7 chain (.1) Lus10023348
[exp]
19.1 0.8794
AT1G61667 Protein of unknown function, D... Lus10018396
[exp]
20.5 0.8584

Lus10012105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.