Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04200 392 / 2e-137 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G79320 226 / 1e-71 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79330 210 / 6e-65 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G16420 197 / 3e-60 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT1G79340 189 / 1e-56 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79310 186 / 7e-56 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G02170 100 / 1e-23 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 99 / 6e-23 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 89 / 5e-20 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010437 [exp] 295 / 7e-102 AT5G04200 204 / 2e-66 metacaspase 2f, metacaspase 9 (.1) Lus10001835 [exp] 170 / 2e-49 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001761 [exp] 169 / 4e-49 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10010436 [exp] 136 / 2e-40 AT5G04200 92 / 2e-24 metacaspase 2f, metacaspase 9 (.1) Lus10035630 [exp] 109 / 3e-27 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10028157 [exp] 103 / 1e-24 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10042857 [exp] 99 / 2e-23 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10009321 [exp] 87 / 6e-19 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10010764 [exp] 88 / 9e-19 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G024500 [exp] 430 / 1e-152 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1) Potri.006G026500 [exp] 421 / 6e-149 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.010G175000 [exp] 177 / 5e-52 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 176 / 9e-52 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1) Potri.012G112200 [exp] 103 / 7e-25 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 102 / 9e-25 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.014G052500 [exp] 101 / 2e-24 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 99 / 3e-23 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 96 / 3e-22 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 93 / 6e-21 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10012106 pacid=23154946 polypeptide=Lus10012106 locus=Lus10012106.g ID=Lus10012106.BGIv1.0 annot-version=v1.0 ATGGAGACAGCAAGGAGAATGGCTGTTCTTGTGGGATGCAACTACCCCAACACCAAGAACGAGTTACACGGTTGCATCAATGACGTCCTCGCAATGAAGC AAGTCCTCATGGATAGGTTCGGGTTCACCAACATCCGGGTCCTGACTGACGACCATCAGGACCCGTCAGCCGACCCTGATAACCTGACGCTGCCCACTGG CTCGAACATCAAGCGAGCGCTCCATGAGATGGTGGATGCGGCGGAAGAAGGGGATGTCCTCTTTTTCCACTACAGTGGACATGGGACCAGGATCCCTTCT ATGAAGCCTGGTCATGTCTTGAGGCAGGATGAGGCCATTGTGCCTTGTGATTTCAATCTCATTACAGATGCTGACTTCCGGCAGCTAGTGAACAAGCTCC AAAAGGGAGCAACCTTCACAATGCTGTCGGATTCGTGCCACAGCGGCGGCCTCATCGACAAGGAAAAGGAACAAATCGGCCCATCGACTGTGCTTTTAAA TACAAAATCACTCGAGAGCCTCTCCATCGCTCCGAAGACCATCCCATTCCAAGCGATCCTCCAACACCTCGCCTCGGTGAGCAACATCCACACCTCTGAC GTGGGAACCCACCTGCTAGAGCTCTTCGGCTCCGAAGCGAGTCTCACGTTCGAGCAACACCTAGCGTCGTCATTGTCTGAAAACGACGGCGACGAGGGTA TCCTACTGAGCGGGTGCCAGGCGAACGAGACGTCTGCGGACATCACTCCGGCTGCTAGTACAATGGCTAGTGGCGGAGGAAAGGCTTACGGGGCGTTCAG TAACGCGATTCAGAAGGTGTTGAAGGAGAATCAGGGTGCCTTGAGCAACAAGGAAGTTGTGGTTAGGGCGAGAGAAGTGCTGAAGGAGCAAGGGTTTGTG AACCAGCATCCTTGCCTTTATTGCAGTGATGAAAATGCTAGTGCTGCTTTCCTATGCCAATGA
AA sequence Show only first row Show all	>Lus10012106 pacid=23154946 polypeptide=Lus10012106 locus=Lus10012106.g ID=Lus10012106.BGIv1.0 annot-version=v1.0 METARRMAVLVGCNYPNTKNELHGCINDVLAMKQVLMDRFGFTNIRVLTDDHQDPSADPDNLTLPTGSNIKRALHEMVDAAEEGDVLFFHYSGHGTRIPS MKPGHVLRQDEAIVPCDFNLITDADFRQLVNKLQKGATFTMLSDSCHSGGLIDKEKEQIGPSTVLLNTKSLESLSIAPKTIPFQAILQHLASVSNIHTSD VGTHLLELFGSEASLTFEQHLASSLSENDGDEGILLSGCQANETSADITPAASTMASGGGKAYGAFSNAIQKVLKENQGALSNKEVVVRAREVLKEQGFV NQHPCLYCSDENASAAFLCQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	0	1
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Lus10041247 [exp]	1.7	0.9762
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	4.2	0.9663
AT2G14095			unknown protein		Lus10010746 [exp]	4.2	0.9527
					Lus10006423 [exp]	6.2	0.9658
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	7.7	0.9151
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	8.5	0.9596
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	8.8	0.9568
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	8.8	0.9603
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	10.0	0.9625
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	11.1	0.9630

Compare expression of checked genes

Lus10012106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.