Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05080 204 / 8e-66 ATUBC22, UBC22 ubiquitin-conjugating enzyme 22 (.1.2) AT1G16890 75 / 4e-17 UBC36 ,UBC13B UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) AT1G78870 75 / 8e-17 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) AT2G02760 74 / 2e-16 ATUBC2 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) AT1G14400 73 / 3e-16 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT5G50870 72 / 3e-15 UBC27 ubiquitin-conjugating enzyme 27 (.1.2) AT1G36340 71 / 3e-15 UBC31 ubiquitin-conjugating enzyme 31 (.1) AT5G62540 71 / 4e-15 UBC3 ubiquitin-conjugating enzyme 3 (.1) AT4G27960 69 / 1e-14 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT5G25760 69 / 2e-14 PEX4, UBC21 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010433 [exp] 306 / 4e-106 AT5G05080 253 / 6e-85 ubiquitin-conjugating enzyme 22 (.1.2) Lus10027282 [exp] 219 / 1e-70 AT5G05080 284 / 1e-95 ubiquitin-conjugating enzyme 22 (.1.2) Lus10038982 [exp] 218 / 1e-69 AT5G05080 310 / 1e-105 ubiquitin-conjugating enzyme 22 (.1.2) Lus10017654 [exp] 79 / 3e-18 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10033611 [exp] 79 / 3e-18 AT1G16890 311 / 5e-111 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10037203 [exp] 76 / 3e-17 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10036727 [exp] 76 / 3e-17 AT2G02760 310 / 1e-110 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10030786 [exp] 74 / 1e-16 AT2G02760 305 / 2e-108 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Lus10000353 [exp] 78 / 3e-16 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G026900 [exp] 219 / 1e-71 AT5G05080 376 / 4e-133 ubiquitin-conjugating enzyme 22 (.1.2) Potri.016G024800 [exp] 203 / 3e-65 AT5G05080 372 / 1e-131 ubiquitin-conjugating enzyme 22 (.1.2) Potri.013G064400 [exp] 77 / 2e-17 AT2G02760 313 / 1e-111 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.011G111400 [exp] 76 / 5e-17 AT1G78870 311 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.001G392500 [exp] 75 / 8e-17 AT1G78870 310 / 1e-110 UBIQUITIN CONJUGATING ENZYME 13A, ubiquitin-conjugating enzyme 35 (.1.2.3) Potri.019G039200 [exp] 74 / 2e-16 AT2G02760 285 / 2e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G064000 [exp] 73 / 4e-16 AT2G02760 284 / 3e-100 ubiquitin-conjugating enzyme 2, ubiquiting-conjugating enzyme 2 (.1) Potri.015G103400 [exp] 73 / 1e-15 AT5G50870 338 / 4e-120 ubiquitin-conjugating enzyme 27 (.1.2) Potri.006G240900 [exp] 72 / 1e-15 AT5G25760 315 / 2e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2) Potri.018G039200 [exp] 71 / 2e-15 AT5G25760 314 / 5e-112 ubiquitin-conjugating enzyme 21, peroxin4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10012110 pacid=23154988 polypeptide=Lus10012110 locus=Lus10012110.g ID=Lus10012110.BGIv1.0 annot-version=v1.0 ATGCTGTTTCCAAAAGCTTTGGCCTTTACCCGGAATGTAAAGATCTGTGGCTATGCAGGTGGGACTCCTTATGAAAACGGTGTCTTTCGAATGAAGCTGC TATTGCTGCATGACTTCCCGCAGTCACCTCCCCAAGGTTTCTTCCTGACCAAGATATTCCACCCGAACATTTCATCCGATGGAAAGATTTGCGTCAATAC GCTAAAGAAGGACTGGAATCCTAGTCTCGGACTAAGACATGTGCTTGTGGTAGTTCGATGCTTGTTGATTGAACCATTCCCTGAATCTGCTCTCAACGAG CAGGCATCGAAGATGCTGCTTGACAACTACGACGATTATTTCAAGCATGCAAGACTTCTCACTGAAATCCACGCAAAGCCGAAACCAAAGTCGAAGTCTG GGGCCATTTCCGAGTCAACAACTGCACTGAACGTAGACCAGACTAACACATCAGCTCCTAATGTTGTCGATCACAAGAACACAGCATTAGCCAGTACTAC ACTGTCGTTGGCATCAGAGTTGCCACCTTGTTCGACCACCTCAAGCGGAGGAGGAAGCAATGTGGATCAGGTAGTTAGTACCGGACGACAAGCAATGCAA CCTGTAACAACAAGCTCTGCGAAGCATGCGATTGGTGTGATGAAAGCTGCGGCAGAGAAGAAGAAAATGGATGCCAGGAAGAAGAGCTTGAAGAGACTAT GA
AA sequence Show only first row Show all	>Lus10012110 pacid=23154988 polypeptide=Lus10012110 locus=Lus10012110.g ID=Lus10012110.BGIv1.0 annot-version=v1.0 MLFPKALAFTRNVKICGYAGGTPYENGVFRMKLLLLHDFPQSPPQGFFLTKIFHPNISSDGKICVNTLKKDWNPSLGLRHVLVVVRCLLIEPFPESALNE QASKMLLDNYDDYFKHARLLTEIHAKPKPKSKSGAISESTTALNVDQTNTSAPNVVDHKNTALASTTLSLASELPPCSTTSSGGGSNVDQVVSTGRQAMQ PVTTSSAKHAIGVMKAAAEKKKMDARKKSLKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10012110 [exp]	0	1
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10011697 [exp]	3.2	0.8548
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	6.5	0.8301
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10002234 [exp]	16.9	0.7167
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	21.1	0.8309
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	25.0	0.8160
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	27.4	0.8096
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	29.8	0.8077
AT2G32760			unknown protein		Lus10037826 [exp]	32.6	0.8096
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	40.2	0.7947
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	40.3	0.7867

Compare expression of checked genes

Lus10012110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.