Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54340 747 / 0 ICDH isocitrate dehydrogenase (.1) AT1G65930 734 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT5G14590 676 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT3G09810 51 / 8e-07 IDH-VI isocitrate dehydrogenase VI (.1) AT5G03290 49 / 3e-06 IDH-V isocitrate dehydrogenase V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010431 [exp] 853 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 711 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 705 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10022252 [exp] 604 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 486 / 9e-170 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10026519 [exp] 51 / 7e-07 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 48 / 7e-06 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 45 / 0.0001 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 44 / 0.0001 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176000 [exp] 777 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.008G080500 [exp] 776 / 0 AT1G65930 734 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 770 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 770 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 665 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.016G091200 [exp] 45 / 5e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 45 / 5e-05 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10012111 pacid=23154951 polypeptide=Lus10012111 locus=Lus10012111.g ID=Lus10012111.BGIv1.0 annot-version=v1.0 ATGTCTTTCCAGAAGATCGGAGTCACCAATCCCATCGTCGAGATGGACGGGGATGAAATGACTAGAGTGTTCTGGAAATCGATCAAGGATAAGCTTATAT TCCCCTTCTTGGATCTGGATATCAAGTACTTTGACCTTGGCTTACCGAACCGGGATGCCACGAACGATCAAGTGACCATAGATAGTGCTGAAGCTACTCT TAAGTATAACGTTGCTATCAAGTGTGCAACTATAACTCCAGATGAAGACCGTGTTAAAGAGTTCGACTTGAAAAAAATGTGGAGGAGCCCTAACGGGACA ATTCGGAACATTCTAAATGGTACTGTTTTCAGAGAACCAATCATCTGCAGGAACGTTCCACGTCTTGTCCCAGGTTGGACAAAGCCAATATGCATTGGCA GGCATGCATTTGGTGATCAATACCGAGCAACTGATTTGGTCGTCGGCGAACCTGGCAAGCTCAAGATGGTGTTTGTGCCTGATGGACACAGCAAAACAAC AGAACTTGAAGTTTTTAAGTTTACTGGAGCTGGAGGTGTAGGTTTGGCCATGTATAACACCGACGAGTCCATTCGTGCTTTTGCGGAGGCTTCGATGAAC ACTGCATACCAGAAAAGGTGGCCGCTTTATCTTAGCACGAAAAATACCATCCTCAAGAAGTACGATGGAAGATTTAAAGACATATTTCAGGAAGTTTATG AAAGCAGATGGAAATCCAAGTATGAAGCCGCAAAAATATGGTATGAACATCGTCTTATCGATGATATGGTCGCTTACTCTCTAAAAAGCGACGGAGGGTA TGTCTGGGCATGCAAGAATTACGATGGAGATGTTCAGAGTGATTTCCTAGCTCAAGGATTTGGTTCTCTTGGCTTGATGACATCAGTATTGGTATGCCCA GATGGTAAAACAATCGAAGCCGAAGCAGCTCATGGCACAGTGACTCGCCATTACCGCGTCCACCAGAATGGAGGAGAAACAAGCACAAACAGCATCGCGT CCATTTTCGCTTGGTCACGAGGCTTAGCTCACAGGGCAAAGCTGGACAGTAATGCTCGACTTTCGGACTTCACCAAGAAGCTCGAAGCAGCCTGCGTTGG AACCGTCGAATCGGGAAAGATGACAAAGGATCTTGCTCTTCTCATCCACGGACCCAAGGTTACTAGGGCTCAGTACTTGAATACTGAAGAGTTCATTGAT GCAGTAGCGGACCAGCTGAGAGCAAGACTAATGGTCAAATCGAAGCTGTAA
AA sequence Show only first row Show all	>Lus10012111 pacid=23154951 polypeptide=Lus10012111 locus=Lus10012111.g ID=Lus10012111.BGIv1.0 annot-version=v1.0 MSFQKIGVTNPIVEMDGDEMTRVFWKSIKDKLIFPFLDLDIKYFDLGLPNRDATNDQVTIDSAEATLKYNVAIKCATITPDEDRVKEFDLKKMWRSPNGT IRNILNGTVFREPIICRNVPRLVPGWTKPICIGRHAFGDQYRATDLVVGEPGKLKMVFVPDGHSKTTELEVFKFTGAGGVGLAMYNTDESIRAFAEASMN TAYQKRWPLYLSTKNTILKKYDGRFKDIFQEVYESRWKSKYEAAKIWYEHRLIDDMVAYSLKSDGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP DGKTIEAEAAHGTVTRHYRVHQNGGETSTNSIASIFAWSRGLAHRAKLDSNARLSDFTKKLEAACVGTVESGKMTKDLALLIHGPKVTRAQYLNTEEFID AVADQLRARLMVKSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54340		ICDH	isocitrate dehydrogenase (.1)		Lus10012111 [exp]	0	1
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10022675 [exp]	1.7	0.8868
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10016410 [exp]	7.7	0.8421
AT2G32760			unknown protein		Lus10016662 [exp]	14.4	0.8842
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10038139 [exp]	16.1	0.8366
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	18.1	0.8685
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	18.8	0.8179
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	22.3	0.8592
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10009412 [exp]	23.2	0.8286
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10004099 [exp]	23.2	0.8570
AT5G22080			Chaperone DnaJ-domain superfam...		Lus10013354 [exp]	28.0	0.8645

Compare expression of checked genes

Lus10012111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.