Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80270 607 / 0 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G15480 551 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 501 / 2e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 161 / 6e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 156 / 6e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07590 156 / 8e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 146 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G27460 137 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 128 / 2e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 127 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010430 [exp] 991 / 0 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 615 / 0 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042757 [exp] 167 / 1e-44 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 166 / 3e-44 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029724 [exp] 166 / 4e-44 AT1G07590 691 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 161 / 1e-42 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013047 [exp] 154 / 2e-40 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 148 / 7e-39 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005855 [exp] 133 / 4e-33 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G039600 [exp] 743 / 0 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 717 / 0 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.003G193600 [exp] 459 / 4e-155 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.009G030900 [exp] 168 / 3e-45 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 146 / 2e-37 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G120900 [exp] 145 / 3e-37 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 144 / 7e-37 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 139 / 3e-35 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 138 / 7e-35 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 138 / 1e-34 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012112 pacid=23154937 polypeptide=Lus10012112 locus=Lus10012112.g ID=Lus10012112.BGIv1.0 annot-version=v1.0 ATGTTGGCTCTTCTCCGAGCTTCGAGTTCTCTCAGGTTACAAGGACTGAGATTAGGAACATGTCGAGCGGGAATCGTCAATCTGGAAAACTTCTGTGGTC AGTTACAACCCAGCACGAACACTATCGATGCCCCTCAGGTCATTGACAGAACTCCTCCTATGTTTCACCATGCTATCAACGCCTCTTCAAAGGTCTCTAG TCCGGTCCGAGGCTTGTCTTCCCAGGCTGGTATGGAGACTAGCTCGTCTGAAGATGACTCCGACGATGATGATACATTCTCCGAGCTGAAAGGTCCAGCA AGTGAGAAGAACGTAGCAGCTGAAGGAAACGAAGATGAGTTAGTTTCCGACCCTGACCTTGCTGATGATGAAGTCGAGGAAGAGCTTGGATTGTTGGATA CCGAAACAGATCCTAGCGAGAAACTATCGACGAGGAAAAGAGCTTCATCGGAACTTTTCAATACCATCGTCTCCAATCAAAGTTTGTCTGTTGAAGCTGT TCTCAATAACTGGGTGGAGGAAGGAAAGGATCTGGAGAAGTCAGAAATCTATTCAGCCATGCTTAATTTCCGTAGACGTCGGATGTACGGTAGAGCCTTG CAGCTTTTGGAGTGGTCAGAGATGAACCAGAAGCTTGATTTCGCGGAGAGGGACTACGCATCGCGCGTTGACTTGATCGCCAAGGTACGCGGGCTACAGA AGGCGGAGAGCTACATAGCAACCATTCCAAAATCATTCCAAGGAGAGATCATCTACAGAACTTTACTGGCGAACTGTGTTACAGCCAACAACGTTAAGAA GGCGGAAGAAGTGTTCAACAAAATGCGTGAATTGGAGTTCGAGCTGACAGCTTTCGCATGCAACCAACTGTTACTTCTCTACAAGAGGCTGGACAAGAAG AAGATAGCCGATGTTCTCCTTATGATGGATAAGGAAAACGTTAAGCCCACGCTTTTCACTTACAAGCTTCTGATAGACACTAAGGGGCAAGCGAACGACA TAGCCGGTATGGAAGTGATAGTCGACACCATGAAGGCTGAAGGACTCGAGCCGGATCTCGCGACTCAAGCTGTCATCGCCAAGCACTACGCTTTCGGCGG GCTTAATGAGAAGGCCGAGGAGATTCTCAAGGAGATGGAAGGGGGGGATTTGAAAGGCAACCGCTGGGTGTGTAAAGTTTTGCTTCCTCTCTATGCTAAC TTAGGAAAGGCGGATGAAGTTATCAGGATTTGGAAGTTCTGCGGGTCGAGCCCGGGGCTGGAGGAGTGCGTCGCTGCTGTCGAGGCGTTTGGCAAGCTGA AGCGGATCGAGGATGCGGAGGCTGTGTTCAAGAAGATGGAGGCGAAGTGGGAGAAGTTGTCGTCAAGGCACTACTCGTCGTTACTCAGGGTTTATGCCAA CAACAAGATGCTGGCGAAGGGGAAGGATCTTGTCCGGAAAATGGGGGACAAGGGGTGCCGGGTTGGTCCCCTTACGTGGGACGCGCTGGTGAAGCTATAC GTGGAGGCGGGGGAAGTGGAGAAGGCGGACTCGATGCTGCACAAGGCGGTGCAGCAGAACAAGATGAAGCCGATGTTCAACTCGTACATAACGATCATGG ACCAGTACTCGAAGAGAGGGGATGTGCATAATGCTGAGAAGATCTTCTTTAAAATGAGGCAGGCTGGGTACGTTGCTCGTCTGAGGCAGTTCCAGGCTCT TGTTCAGACGTATGTGAATGCGAAGTTGCCGGCGTATGGGATCAGGGAGAGGATGAAGGCCGATAACATCTTCCCCAACAAGGCGTTGGCTGCGCAGCTT GCTCAGGTTGACGCATTTCGGAGGACTGCTGCTTCCGATTTGCTAGACTGA
AA sequence Show only first row Show all	>Lus10012112 pacid=23154937 polypeptide=Lus10012112 locus=Lus10012112.g ID=Lus10012112.BGIv1.0 annot-version=v1.0 MLALLRASSSLRLQGLRLGTCRAGIVNLENFCGQLQPSTNTIDAPQVIDRTPPMFHHAINASSKVSSPVRGLSSQAGMETSSSEDDSDDDDTFSELKGPA SEKNVAAEGNEDELVSDPDLADDEVEEELGLLDTETDPSEKLSTRKRASSELFNTIVSNQSLSVEAVLNNWVEEGKDLEKSEIYSAMLNFRRRRMYGRAL QLLEWSEMNQKLDFAERDYASRVDLIAKVRGLQKAESYIATIPKSFQGEIIYRTLLANCVTANNVKKAEEVFNKMRELEFELTAFACNQLLLLYKRLDKK KIADVLLMMDKENVKPTLFTYKLLIDTKGQANDIAGMEVIVDTMKAEGLEPDLATQAVIAKHYAFGGLNEKAEEILKEMEGGDLKGNRWVCKVLLPLYAN LGKADEVIRIWKFCGSSPGLEECVAAVEAFGKLKRIEDAEAVFKKMEAKWEKLSSRHYSSLLRVYANNKMLAKGKDLVRKMGDKGCRVGPLTWDALVKLY VEAGEVEKADSMLHKAVQQNKMKPMFNSYITIMDQYSKRGDVHNAEKIFFKMRQAGYVARLRQFQALVQTYVNAKLPAYGIRERMKADNIFPNKALAAQL AQVDAFRRTAASDLLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	0	1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	1.7	0.9211
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	2.0	0.9184
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018394 [exp]	2.4	0.9096
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10043322 [exp]	5.0	0.8373
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10038851 [exp]	5.8	0.8511
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	6.6	0.8907
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	7.5	0.8732
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10002338 [exp]	10.6	0.8772
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	11.2	0.8800
AT2G40290			Eukaryotic translation initiat...		Lus10007521 [exp]	12.4	0.8610

Compare expression of checked genes

Lus10012112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.