Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04130 1001 / 0 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 963 / 0 GYRB1 DNA GYRASE B1 (.1) AT5G04110 248 / 4e-73 GYRB3 DNA GYRASE B3 (.1) AT3G23890 82 / 1e-15 ATTOPII, TOPII topoisomerase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010428 [exp] 1221 / 0 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Lus10016397 [exp] 98 / 1e-20 AT3G23890 1682 / 0.0 topoisomerase II (.1.2) Lus10019720 [exp] 97 / 2e-20 AT3G23890 1685 / 0.0 topoisomerase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036200 [exp] 1092 / 0 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Potri.006G039400 [exp] 1082 / 0 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.001G264000 [exp] 91 / 2e-18 AT3G23890 1716 / 0.0 topoisomerase II (.1.2) Potri.009G058900 [exp] 89 / 1e-17 AT3G23890 1691 / 0.0 topoisomerase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0413 [flax] [poplar] Toprim-like PF01751 [flax] [poplar] Toprim Toprim domain CL0413 [flax] [poplar] PF00986 [flax] [poplar] DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [flax] [poplar] S5 PF00204 [flax] [poplar] DNA_gyraseB DNA gyrase B
Representative CDS sequence Show only first row Show all	>Lus10012114 pacid=23154955 polypeptide=Lus10012114 locus=Lus10012114.g ID=Lus10012114.BGIv1.0 annot-version=v1.0 ATGGCGCGTCTTCTGAAACAAACTCCACTTTATCGTTCTCTCCTCCTTCTTTCCAGAACCACCATGCCCGCCTCCTCCTCCACCCTCTCTGCAACCACTT CTTCGCTTAACCTCCGCTCTTTCTCTTCAGTCTCTCCGCTTCACCACCAGTCTTATCCCTTCCAAACCAGGGTAGGTTTTGCTTCGAGGAGGTCGTGCTT AGTTCAGTCTCCAGTTCGAAATGTCGTTTCTCCTAGAGCTACCATGTCTTCCGCCATATCTACCGAGGCGTTGAAGGAGAATGCGCCGCCTAACGCTTAT GGCTCGGACCAAATTCAGGTGCTGAAAGGGCTGGACCCTGTGAGGAAAAGGCCAGGGATGTACATCGGCAGCACTGGCCCTCGTGGCTTGCATCATTTGG TGTATGAGATATTGGACAATGCTGTCGATGAGGCTCAAGCGGGGTATGCTTCGAGGGTGGAATTGATCTTACACGCTGATAATTCTGTCAGCATTACAGA CGATGGGCGAGGAATTCCTACCGATTTGCATCCAGCAACCAAGAAATCCGCCTTAGAGACTGTGTTGACGGTTTTACATGCTGGTGGCAAGTTCGGTGGT TCAAATAGTGGCTATAAAGTTTCTGGTGGACTGCATGGTGTGGGATTATCAGTCGTGAATGCCCTGTCTGAGAATTTGGAAGTTACAGTTTGGCGTACCG GGATGGAGTACAAGCAGAAGTATTCACGTGGAAACCCTGTAACAAGTCTCATTGGCCGTTCTCTTCCGGTTGAATCAAAAGATCGCAAAGGAACTATGAT AAGATTTTGGCCCGACAAAGAAGTATTTACCACTGAAATACAGTTTGATCACAACACTATAAGTGGACGAGTCAGGGAGCTTGCTTTTCTGAATCCAAAA CTTCATATAACTATCATAAAAGAAGATTCTGATCCAGAAAAACGCCAGTGCGACGAGCATTATTATGCAGGAGGGCTGGTCGAATATGTGAACTGGCTAA ACAATGACAAGAAACCACTCCATGATGTTGTGAGCGTCAGCAAAGAACTTAATGGAGTCACAATCGACATGGCTTTTCAATGGTGTTCGGATGCATACTC CGATACAATACTAGGATATGCAAACAGCATACGTACTATTGACGGTGGAACACATATCGATGGTTTCAAGGCTTCGCTAACAAGAACCCTTAACAGCCTT GGGAAGAAGTCGAAGTTAATGAAGGACAAGGATATTAACTTAAGTGGTGAACACGTACGAGAGGGATTGACATGCATTATCTCCGTCAAAGTACCGAGCC CTGAGTTCGAAGGACAAACAAAGACAAGATTGGGCAATCCTGAAGTTCGGAAAGTTGTCGATCAAGCCGTTCAAGAGCATGTCACCGAGTATTTTGAATT GCACCCGGATGTCCTTGATTCAATCCTTTCAAAATCTCTTAATGCCCTCCAGGCAGCTTTAGCAGCCAAGAGAGCTAGAGAATTGGTCCGGTCAAAGAGT GTATTAAGGTCATCATCTCTCCCCGGGAAGCTGGCTGATTGCTCATCTACCAATCCTGAAGAAGCCGAAATTTTTATTGTTGAAGGTGATTCAGCTGGTG GAAGTGCTAAGCAGGGTCGAGATAGACGGTTCCAGGCTATCCTACCTCTTCGAGGGAAAATTTTAAACATCGAAAGAAGGGACGAGGCCGCAGTTTACAA GAACGAGGAGATTCAGAATCTGATACGTGCTCTTGGACTTGGAGTGAAGGGAGAGGAGTTCAAGAAGGAAGCTCTCCGTTATCATAAGATCATCATCTTA ACTGATGCTGATGTCGATGGTGCTCACATCAGAACACTTCTGTTGACTTTCTTCTTCAGATATCAGAGAGCTCTATTTGATGAAGGTTGCATTTATGTTG GTGTTTCACCGCTGTACAAGGTTGAAAGAGGAAAGCAGGCTCACTACTGCTATGATGAAGCAGAGCTGAAGAAGGTTCAGAGTTCGTTCCCCCAGATCGC TTCTTACCCCAGAGTTCGTTCCCCCAGAACGCTTCTTACACCATCCAAAGGGTTGGGAGAGATGATGCCTGTGCAACTGTGGGAAACGACAATGGATCCA GACCGAAGGCTGCTGAAGCAACTAGTGGTCGAAGATGCAGCTGAGGCGAATGTCGTGTTCTCGTCTCTCATGGGGGCTCGGGTGGATACTCGAAAAGAGT TGATCAAGAATGCTGCAGCAATGATAAACATTGATCAACTCGACATTTAG
AA sequence Show only first row Show all	>Lus10012114 pacid=23154955 polypeptide=Lus10012114 locus=Lus10012114.g ID=Lus10012114.BGIv1.0 annot-version=v1.0 MARLLKQTPLYRSLLLLSRTTMPASSSTLSATTSSLNLRSFSSVSPLHHQSYPFQTRVGFASRRSCLVQSPVRNVVSPRATMSSAISTEALKENAPPNAY GSDQIQVLKGLDPVRKRPGMYIGSTGPRGLHHLVYEILDNAVDEAQAGYASRVELILHADNSVSITDDGRGIPTDLHPATKKSALETVLTVLHAGGKFGG SNSGYKVSGGLHGVGLSVVNALSENLEVTVWRTGMEYKQKYSRGNPVTSLIGRSLPVESKDRKGTMIRFWPDKEVFTTEIQFDHNTISGRVRELAFLNPK LHITIIKEDSDPEKRQCDEHYYAGGLVEYVNWLNNDKKPLHDVVSVSKELNGVTIDMAFQWCSDAYSDTILGYANSIRTIDGGTHIDGFKASLTRTLNSL GKKSKLMKDKDINLSGEHVREGLTCIISVKVPSPEFEGQTKTRLGNPEVRKVVDQAVQEHVTEYFELHPDVLDSILSKSLNALQAALAAKRARELVRSKS VLRSSSLPGKLADCSSTNPEEAEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKILNIERRDEAAVYKNEEIQNLIRALGLGVKGEEFKKEALRYHKIIIL TDADVDGAHIRTLLLTFFFRYQRALFDEGCIYVGVSPLYKVERGKQAHYCYDEAELKKVQSSFPQIASYPRVRSPRTLLTPSKGLGEMMPVQLWETTMDP DRRLLKQLVVEDAAEANVVFSSLMGARVDTRKELIKNAAAMINIDQLDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	0	1
AT5G03420			5'-AMP-activated protein kinas...		Lus10023003 [exp]	1.0	0.9457
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	1.7	0.9395
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	2.0	0.9420
AT2G44640			unknown protein		Lus10043347 [exp]	3.5	0.9202
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	3.7	0.9162
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	4.5	0.9133
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	5.2	0.9145
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	8.1	0.9111
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	8.7	0.9185
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Lus10033158 [exp]	10.4	0.8939

Compare expression of checked genes

Lus10012114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.