Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32170 382 / 4e-133 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 377 / 5e-131 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G14720 304 / 1e-102 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 302 / 9e-102 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G10550 201 / 2e-62 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 186 / 5e-57 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 171 / 3e-51 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G65730 169 / 2e-50 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT3G25050 169 / 3e-50 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G13870 161 / 2e-47 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010427 [exp] 519 / 0 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10030760 [exp] 306 / 3e-103 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10013240 [exp] 301 / 2e-101 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10029000 [exp] 298 / 4e-100 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029165 [exp] 184 / 4e-56 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 182 / 3e-55 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10025919 [exp] 171 / 6e-51 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10038182 [exp] 166 / 3e-49 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10021422 [exp] 166 / 3e-49 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136100 [exp] 423 / 3e-149 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 411 / 1e-144 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.010G102300 [exp] 307 / 9e-104 AT1G14720 470 / 7e-168 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.008G138400 [exp] 301 / 3e-101 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.009G163850 [exp] 248 / 4e-81 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 193 / 2e-59 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 181 / 6e-55 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.001G071000 [exp] 156 / 3e-45 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 154 / 2e-44 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 153 / 3e-44 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10012115 pacid=23155003 polypeptide=Lus10012115 locus=Lus10012115.g ID=Lus10012115.BGIv1.0 annot-version=v1.0 ATGGATGGCTTTCCTTCTTCTTCTTTGCCTTTTCTTCTCTTGTTGATCACCATTTCTTCCGTTGCTCGAGCTTCGTCGTCGTCGTTCAATCTCTCTACTG TTTCGTTCGACGATGCGTACTCTCCGCTTTTTGGCCATTCCAACCTCCTCCGCTCCCCTGATGGCCGCTCCGTCCGCCTCCTCCTCGACCGCTCCACCGG GTCGGGATTCATATCCTCAAAAATGTACAGCTACGGATTCTTCAGCGCGAACATCAAGCTCCCCGGAGAGTACACCGCCGGCGTCTGCGTTGCCTTCTAT ACATCAAACGGGGACATATTCGAGAGGAACCACGACGAGTTGGACTTCGAGTTTCTAGGTAACGTGAAGGGGAAGCCGTGGAGGTTCCAAACGAACTTGT ACGGTAACGGGAGCACACATCGCGGACGGGAGGAGCGATTCTACATTGACGACGTACCGATTCGAGAGGTGATTCGAAACTCAGAGATGGGTGGGGAATA CCCGTCAAAGCCTATGTCCCTCTATGCCACAATCTGGGATGCATCTAGCTGGGCGACATCCGGTGGCCGGTTCAGGGCAGACTACGGCTACGCACCTTTC GTGGCAGAGTTCAAGGACCTTGCCCTAGACGGCTGTCCTATCGAAACTGTCGAACAATTCCCAAAGACGGAGAATTGCTCCAACAGCCACACACGGCTCG CGACCGCGGATTATTCCACGATCACAGCAAAACAGGGTCACGCCATGCGCAGATTCCGGCAACGATACATTTACTATTCGTATTGCTATGATAGTCTCCG GTACCCGGTTCCACCGCCGGAATGTGTAATTGATACGCAGGAGAAGTTGAGGTTTAAGGATACGGGCAGGTTGAAATTCGGGGGCAGCCACCGGAGCCCC AAACGCCGGTCCAGGAGTCGACGGAGCCGGCCGGTTCGGGTTGAGACGGTTGACGACCCGGATATGTGA
AA sequence Show only first row Show all	>Lus10012115 pacid=23155003 polypeptide=Lus10012115 locus=Lus10012115.g ID=Lus10012115.BGIv1.0 annot-version=v1.0 MDGFPSSSLPFLLLLITISSVARASSSSFNLSTVSFDDAYSPLFGHSNLLRSPDGRSVRLLLDRSTGSGFISSKMYSYGFFSANIKLPGEYTAGVCVAFY TSNGDIFERNHDELDFEFLGNVKGKPWRFQTNLYGNGSTHRGREERFYIDDVPIREVIRNSEMGGEYPSKPMSLYATIWDASSWATSGGRFRADYGYAPF VAEFKDLALDGCPIETVEQFPKTENCSNSHTRLATADYSTITAKQGHAMRRFRQRYIYYSYCYDSLRYPVPPPECVIDTQEKLRFKDTGRLKFGGSHRSP KRRSRSRRSRPVRVETVDDPDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	0	1
					Lus10036165 [exp]	2.0	0.9213
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	5.7	0.9344
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	6.5	0.9169
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	6.9	0.9299
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	8.5	0.9272
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	11.2	0.9175
AT5G07360			Amidase family protein (.1.2)		Lus10032519 [exp]	11.3	0.9155
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000089 [exp]	19.2	0.8764
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	20.0	0.9137
AT5G59613			unknown protein		Lus10005899 [exp]	20.1	0.9154

Compare expression of checked genes

Lus10012115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.