Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 598 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 500 / 7e-174 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT1G13460 494 / 5e-172 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 493 / 1e-170 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 488 / 3e-169 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G09880 480 / 3e-166 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 473 / 2e-163 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 455 / 1e-156 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 437 / 3e-149 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010426 [exp] 943 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10017752 [exp] 862 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10033069 [exp] 706 / 0 AT5G25510 529 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 578 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 544 / 0 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 526 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 509 / 3e-177 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 505 / 9e-176 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 500 / 2e-173 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073925 [exp] 743 / 0 AT5G25510 609 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G247100 [exp] 595 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 593 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 520 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.002G226200 [exp] 509 / 4e-177 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054300 [exp] 503 / 6e-175 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 501 / 3e-174 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 500 / 2e-173 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 498 / 8e-173 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.016G098400 [exp] 492 / 4e-171 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10012116 pacid=23154959 polypeptide=Lus10012116 locus=Lus10012116.g ID=Lus10012116.BGIv1.0 annot-version=v1.0 ATGGAAGTTGTCTCTGAAGTCAATTTGCTGGTTCAGTCTATTCCAAATTCTCCAGGAAGTTATCCAGGTTTTGTGATTTCTGGACCTAGTGCCATGCTCA AGCAAATTCTTAGTAAAATTCCCCGCAAGTCTCCAAAATCTGACCCCCTGGAGGCCACAGTGGTTAATGATAATGGAGGAAGCTCGTTTTCAAGCCGGTT GAATGTTGTTAAAAGGGTGTCCTCTGCCGTTTTTCCTTCAAGCATTATGGCCGGAGTTGATGCAGTGGAGCCCCATCTATCCTTCAAGGATGTTTCAGCG GCACAAAAGCAGAATCTGTTTGTTAGTAAACTAAACCTTTGCTGTGAGATACCTGATTATTGTAGTGATCCAGACAAGACTGATACCCTGATGGATATTA AACGAGAAGCATTGGTGGAGCTTGTTGATTTTGTTTCTTCGGGATCAGCAACGTTCACTGAACCGGCTATTGCAGCAATGTGTAAGATGTTTACAGCAAA CCTTTTCAGAGTCTTCCCTCCAAAGTTCACTGAAGATGAGGAGCCGATGTTCGATCCTGCTTGGTCGTATTTACAAATCGTATATGACCTGCTGCTTCGT TTCACGAGTTTGGTGGATGCAAAGATGGCAAAGAAGCATATAGATCATGCTTTTGTTTCGAGAGTACTTGACCTATTTGATTCCGATGATCCAAGAGAAA GGGAATGTTTGAAAACTGTTCTACATGGGATTTATGGGAAATTCATGATACACAGGCCCTTCATAAGGAAAGGTGTCAGCAATATCATCTACCGGTTTGT CTACGAGACCGAACGGCATAATGGGATTGCCGAACTATTGGAGATCTTCGGTAGCGTTATTAGTGGGTTTGCCCTACCTTTGAAGGAAGAGCACAAATTG TTTCTGTTGAGGGCTTTGCTGCCTCTGCATAAACCGAAATCGGTTGGCATTTATCATCAACAATTAACTTTTTGTGTTGTGCAGTTTGTGGACAAGGATC CGAAATTGGCTGGTTCAGTGATCAAAGGCCTGTTGAAGTACTGGCCTTTGACGAACAGCCAAAAGGAGTTGATGTTTATAAGTGAGATGGAAGAGATTTT GGAAATGACCAGCATGGATGAGTTTCAGATGGTCATGGTGCCATTGTTTCGGCGACTTGGGGGTTGTCTGAATAGTTCCCATTATCAGGTCGCAGAACGA GCTCACTTGCTATGGAACAACGAGCGAATTGTGAACCATCTTATTGTACAGAATCGGGAGGTGATTATTCCGATCATCTTCACAGCTCTTGAACACAACA GTCAGAACCACTGGAACCAAGCAGTTCTTAACCTGACACAGTACGTAAGGAAGATATTCCTGGAGATGGACGAAGAGCTAATGATGGCGTGCCAACACAA GCTGGAGGAAGAACATTGGAAGCCAAATGTTGTGGCGGAGAAGAGGCGATTAACGTGGGAAAACTTGGAAAACGCTGCTGGAACAGGTTCCATCATCAAC TCACCCATTTCTTCCCTCGGCATGAACATAGCTCAAATAGAACCAGCGACAACATGTTCTGTTGCTTGCTAG
AA sequence Show only first row Show all	>Lus10012116 pacid=23154959 polypeptide=Lus10012116 locus=Lus10012116.g ID=Lus10012116.BGIv1.0 annot-version=v1.0 MEVVSEVNLLVQSIPNSPGSYPGFVISGPSAMLKQILSKIPRKSPKSDPLEATVVNDNGGSSFSSRLNVVKRVSSAVFPSSIMAGVDAVEPHLSFKDVSA AQKQNLFVSKLNLCCEIPDYCSDPDKTDTLMDIKREALVELVDFVSSGSATFTEPAIAAMCKMFTANLFRVFPPKFTEDEEPMFDPAWSYLQIVYDLLLR FTSLVDAKMAKKHIDHAFVSRVLDLFDSDDPRERECLKTVLHGIYGKFMIHRPFIRKGVSNIIYRFVYETERHNGIAELLEIFGSVISGFALPLKEEHKL FLLRALLPLHKPKSVGIYHQQLTFCVVQFVDKDPKLAGSVIKGLLKYWPLTNSQKELMFISEMEEILEMTSMDEFQMVMVPLFRRLGGCLNSSHYQVAER AHLLWNNERIVNHLIVQNREVIIPIIFTALEHNSQNHWNQAVLNLTQYVRKIFLEMDEELMMACQHKLEEEHWKPNVVAEKRRLTWENLENAAGTGSIIN SPISSLGMNIAQIEPATTCSVAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25510			Protein phosphatase 2A regulat...		Lus10012116 [exp]	0	1
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10017120 [exp]	2.4	0.8044
AT2G21190			ER lumen protein retaining rec...		Lus10042389 [exp]	3.3	0.7576
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	3.5	0.8191
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	4.2	0.7741
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10010717 [exp]	6.7	0.7774
AT2G40480			Plant protein of unknown funct...		Lus10029055 [exp]	8.4	0.7691
AT1G48320			Thioesterase superfamily prote...		Lus10043043 [exp]	9.5	0.7541
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10025869 [exp]	10.4	0.7921
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10019750 [exp]	10.8	0.6981
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	12.4	0.7926

Compare expression of checked genes

Lus10012116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.