Plant FIBer expression Database

Lus10012117 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31940 183 / 5e-60 unknown protein
AT2G35585 162 / 7e-52 unknown protein
AT2G01913 43 / 1e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010425
[exp]
301 / 6e-107 AT1G31940 186 / 3e-61 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G135000
[exp]
209 / 1e-70 AT1G31940 194 / 1e-64 unknown protein
Potri.010G101500
[exp]
64 / 2e-13 AT2G35585 60 / 2e-11 unknown protein
Potri.008G140000
[exp]
59 / 1e-11 AT2G35585 61 / 4e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10012117 pacid=23154989 polypeptide=Lus10012117 locus=Lus10012117.g ID=Lus10012117.BGIv1.0 annot-version=v1.0
ATGGTGGGGATTTTCTCCAGACTCTCTGTGGGTAGCAGAGCTTCCCATAGACGGACACAGAGCGCCCTCCAGGATGATAGGGAAGCTATGCCACCAAGTG
CAGATATTCCCGGCATGGAGACTGTGGCTTCAGCTACTGCTCCCCATGGCATTCAGGTGACCGTGGAGTTTAAGCCGGTTGAGCATCCAATTGAGCCTCT
TGACAATGATCAACCTATTCAGTGTCCGGCACCCGAACCTTCGATTCTTAATGATGGAAGAATATGGAAGGAGAGGGTAACTGCGACGGTACGGAGGAGG
AACGACTTGCCGGTCATGAGAGAAGATGGCAGTGAAGCTCCGGAGCCTGAATCTGCAGCAGGGTCTCGTCGGCCTCCAATGAGATCGAATCGGTTGATCC
TACCTTCTGTCAGTGCCCCGGAACACAATTTGCTGCAGCTACTAGAGGAATGCAATGCTTCTGCTATCTGA
AA sequence
>Lus10012117 pacid=23154989 polypeptide=Lus10012117 locus=Lus10012117.g ID=Lus10012117.BGIv1.0 annot-version=v1.0
MVGIFSRLSVGSRASHRRTQSALQDDREAMPPSADIPGMETVASATAPHGIQVTVEFKPVEHPIEPLDNDQPIQCPAPEPSILNDGRIWKERVTATVRRR
NDLPVMREDGSEAPEPESAAGSRRPPMRSNRLILPSVSAPEHNLLQLLEECNASAI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31940 unknown protein Lus10012117
[exp]
0 1
AT1G07040 unknown protein Lus10013272
[exp]
2.4 0.9137
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Lus10017462
[exp]
3.3 0.9205
AT1G18835 ZF_HD MIF3 mini zinc finger 3, mini zinc ... Lus10002058
[exp]
3.7 0.9015
AT4G29960 unknown protein Lus10001629
[exp]
3.9 0.9129
AT1G31300 TRAM, LAG1 and CLN8 (TLC) lipi... Lus10018287
[exp]
4.7 0.8943
AT5G13180 NAC VNDIP2, ANAC083... VND-interacting 2, NAC domain ... Lus10002581
[exp]
5.2 0.8973
AT5G45130 ATRAB-F2A, RHA1... ARABIDOPSIS RAB HOMOLOG F2A, R... Lus10040625
[exp]
6.7 0.9029
AT5G18610 Protein kinase superfamily pro... Lus10023473
[exp]
8.1 0.8662
AT2G35680 Phosphotyrosine protein phosph... Lus10040174
[exp]
8.2 0.9053
AT1G65020 unknown protein Lus10024543
[exp]
8.4 0.8949

Lus10012117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.