Plant FIBer expression Database

Lus10012118 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45610 199 / 3e-55 SUV2 SENSITIVE TO UV 2, protein dimerizations (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010424
[exp]
848 / 0 AT5G45610 253 / 8e-75 SENSITIVE TO UV 2, protein dimerizations (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G134800
[exp]
419 / 2e-137 AT5G45610 203 / 3e-56 SENSITIVE TO UV 2, protein dimerizations (.1)
Potri.003G098700
[exp]
418 / 5e-137 AT5G45610 311 / 3e-96 SENSITIVE TO UV 2, protein dimerizations (.1)
PFAM info
Representative CDS sequence
>Lus10012118 pacid=23154950 polypeptide=Lus10012118 locus=Lus10012118.g ID=Lus10012118.BGIv1.0 annot-version=v1.0
ATGAGCGGCGAAAATGAAGACGCAGATTTTGATGAATGGGACGACGATTTTGTGAACGAGCTTATACAGAAAGAAGAGATTGCTCTCACCGCCTGCTCCT
CTTCCTCTTCTTCGAAACTCAAGCCCTCCTTCCTCCTGCTGCCACCGGTTCATCCCGGCGATGATAGTTACTCGCCTCCGCGTGAACTCACTCAGAGACC
TCTCGTCCTTGAAAAATCAGATCGCAATGGATCCCCTTCTTTTCCCCAGAATGACATCGCGAAAGAGGTTGAAATTCGGCGCCTCAAGACGGAGTTGGAA
CTACGTTCTAAGCAACTGGCCCAAATGGAATATGAATGCACTGAGCTGAAGAAGGAGAGGGTTAAGAGAGATGCGCAGGTTGAAAGCTCCCGTTCTCGCT
GTGGTGTTAGCTCCTCAAAAGCTAGGAATTTGGATGGTAAAGGTTTTGATGTTGATGCTCAGCACGACTATTCTAAGACAAAAAATATTGAAGGTCTGGG
GGATTGTCGGAGAGAAAGATTGGTTTCATCCTCAAGGGCTGTAGGGATTCAAACTGATAAAGATGACGATCCTGTTAGAGGTGATGCAAACCATGGTGCA
TCGTCTTCTGTGCGCCTTCGTGAGGAGTTGCGATCCATTTGGGGATCTACAAGCCACCAACAGTCTGGAAGAAATTTCATCTCTAAGTTGTTAATGGCCT
GTACAGAAGAGTTACGTATTTTGTTCGGGACCATGAGCTTAAGTATGCACCCGGCTGGAGGAACAAGGTCTACTGCTGCCGAAACTGCACCTTCTGCTTC
TCTTTTGAACCATGTACACGGGTTACGTCCTGCTGATGCTGCAAAAGTATCTGAATTGTACAATGTCATGATAAAGATCAGTAATGGGCTGCTAAAGGTG
GAAGCTTTGCTTGGACCTCTGCTTGAACTCTGTGTCATTACGAATGACCTGGATGACGATTTAGTATCCATTGTCTTCATGTTGCTTTTTTTCTTCTGCT
TAATACCTATTTTGTGTGTTTCTTCAATGAAACCTTACCCCGAGGACAATGTCAAAGTCGAGGGACTTCATTGCGACAGCAGCAGCAAGGTGTCTTATGG
TGGACTTTCGGATATCAGTAATCTATCCGCTGTCTCTTCTGTAAACTGGCATTCACTATTTGAGCTAATGCTTCAAATTGCCATGGACAACAGTAACGAA
AGTGTGCGGTTTGAGGCTATATCTATAATGAACTTGATTGTTTCAACAAGTAATGCATTCATGGAAAGGGAAAAGTATGGACCAGGAATGGTGTTACAGA
GCATTGCTCAATTTCTCAAAAGGGAAGCTGGCTTGTCTGTGCAAAAGGCAGCTCTATCAATTTGTCCGTACTCTTTCGCAGGTCCCAAGATATTGATCAC
TTTCTGCTCTGGTTGCCTCGAGGAGCGTGCCTTTGCTGCAAAGGGCGAGAGAAACATTTTGAGTACTTGCAATGGGTACAGCTTCGTCCTCATCGGTTTG
GCAGAATGCATATCTTGCAGCGGGAATAGTTTACAGCAAATAGAACTTTGCAAAAATGCTGTTGCTACACTGGCATTTTTGGCTGCTTCCGAGAAGTCTG
GCTACGAAATACTCGTTAGCCACCGAGTAGCTGGAGGGGCAAACTTTCTTATGCTGATCTTGCAAGAATTGGCATCAGATAGGAGTTCCGAAGGATCAGA
CTCTGTTGAATCTGTCGAAAAAGTTCGAGCGAGGACGATGCTAATCAGGGAGGCGCTGATACTGTTGAATCGACTCGTATCCAACCCGGGGTCCTCGGCC
ATAGTGCTGCGAGTGCTAACTGGCAGCAGAGACATGGCCAGTTTGACAATTGATGTCGCAAGTAGGCTGTCCTCGAAAGAACAGACCCCAAACTACTACA
CTAGTACAGCTGGGGAATCAGAAGCTTTGGACTTGGCTAAGAAATTCAAGAGAAGAGTGTACGCTTACCTGGGATCTATTGTTGCTTAA
AA sequence
>Lus10012118 pacid=23154950 polypeptide=Lus10012118 locus=Lus10012118.g ID=Lus10012118.BGIv1.0 annot-version=v1.0
MSGENEDADFDEWDDDFVNELIQKEEIALTACSSSSSSKLKPSFLLLPPVHPGDDSYSPPRELTQRPLVLEKSDRNGSPSFPQNDIAKEVEIRRLKTELE
LRSKQLAQMEYECTELKKERVKRDAQVESSRSRCGVSSSKARNLDGKGFDVDAQHDYSKTKNIEGLGDCRRERLVSSSRAVGIQTDKDDDPVRGDANHGA
SSSVRLREELRSIWGSTSHQQSGRNFISKLLMACTEELRILFGTMSLSMHPAGGTRSTAAETAPSASLLNHVHGLRPADAAKVSELYNVMIKISNGLLKV
EALLGPLLELCVITNDLDDDLVSIVFMLLFFFCLIPILCVSSMKPYPEDNVKVEGLHCDSSSKVSYGGLSDISNLSAVSSVNWHSLFELMLQIAMDNSNE
SVRFEAISIMNLIVSTSNAFMEREKYGPGMVLQSIAQFLKREAGLSVQKAALSICPYSFAGPKILITFCSGCLEERAFAAKGERNILSTCNGYSFVLIGL
AECISCSGNSLQQIELCKNAVATLAFLAASEKSGYEILVSHRVAGGANFLMLILQELASDRSSEGSDSVESVEKVRARTMLIREALILLNRLVSNPGSSA
IVLRVLTGSRDMASLTIDVASRLSSKEQTPNYYTSTAGESEALDLAKKFKRRVYAYLGSIVA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45610 SUV2 SENSITIVE TO UV 2, protein dim... Lus10012118
[exp]
0 1
AT4G18840 Pentatricopeptide repeat (PPR-... Lus10010902
[exp]
2.8 0.8031
AT4G14050 Pentatricopeptide repeat (PPR)... Lus10040634
[exp]
6.0 0.8177
AT4G36050 endonuclease/exonuclease/phosp... Lus10028455
[exp]
8.1 0.7987
AT3G07060 EMB1974 embryo defective 1974, NHL dom... Lus10011867
[exp]
8.5 0.7942
AT3G26540 Tetratricopeptide repeat (TPR)... Lus10015584
[exp]
14.1 0.8334
AT4G02400 U3 ribonucleoprotein (Utp) fam... Lus10007881
[exp]
14.3 0.8144
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Lus10006766
[exp]
19.0 0.8016
AT4G14850 MEF11, LOI1 lovastatin insensitive 1, Pent... Lus10006123
[exp]
19.9 0.7730
AT5G52820 WD-40 repeat family protein / ... Lus10039597
[exp]
21.9 0.8119
AT5G52820 WD-40 repeat family protein / ... Lus10029493
[exp]
23.2 0.8083

Lus10012118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.