Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16910 1158 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT3G03050 1154 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT4G38190 1098 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1060 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT2G33100 1018 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G32180 1001 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 712 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 710 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 688 / 0 CESA5 cellulose synthase 5 (.1) AT5G64740 682 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002134 [exp] 1268 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10009248 [exp] 1142 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1103 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1094 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1086 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10026568 [exp] 1077 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10010024 [exp] 1045 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10038008 [exp] 1039 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 933 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136200 [exp] 1209 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1193 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1187 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1174 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.009G170000 [exp] 1092 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1090 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1058 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1041 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 978 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 971 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10012119 pacid=23154936 polypeptide=Lus10012119 locus=Lus10012119.g ID=Lus10012119.BGIv1.0 annot-version=v1.0 ATGGCTACAAACCAGGGGCGTCGCCCGCCGTCCCTCGCCGTCCACAGCAACTACAGAGACTTCGACAGCAGCGAGATCGGCAACAGCAGCGTCGAATCCG CCACAACCTACACCGTCCACATCCCTCCAACCCCCGACAACCACCGCCGCCTTACCAAGGATCAGATGGAGCATCTCTCCATCGACTCTTCCACTTCCTC CTCGCCCGCTTCTTTCCTTCCCACCGGTCGTAACCCGTCGGGCGGGTTGACCATGACTGTGTCCCGGCCGAACCGGTCTGATTCTGGACCCGGTTTGTGC CAGGTTCGAGGGTGCGACGCTAGGGCGATGTCGGACGGTGGCGGGGCGGCGGTCTTCCCGTGTAGGTGTGAGTATAGGATTTGCGGGGAGTGTTTTAAAG AGGCCGTGGAGGAGGAAGGTGGTGGCTGTCCGGGGTGTAAGTTACCCTACGAGAAGGGTAGGATGGGTCAGCTGGATAGAACGCTGACCGTTGTGGATAA CAATGGTCGCATTCAGAGCGAGTTTGACTCTTCGGAGAACGCGGTTGGTGAGGTGGATTTGGTCGGGGATAAGGAGCGGAAACCGCTCACTCGGAGCTTT GGTATCTCTGCTAGTATCATTGTACCGTATCGGTTGTTGATCATAATCCGGGTAATCGCCCTTGCAATGTTCCTAGAATGGAGGGTGACGAATCCCAACG AGGAGGCAATCTGGCTATGGGGAATGTCAGTAATCTGCGAGCTCTGGTTTTCCTTCACATGGCTACTCGACCAACTCCCTAAACTCCGCCCGGTCAAACG GGTCGTTGATTTGGATCTCCTGACAGAAAAATTCGAAACTCCTTACGCTAGCGCCGTCGGGAAATCCGACCTGCCGGGGATCGACGTCATTGTATCCACC TCGTCCGACCCGGATAAGGATCCGCCGCTAGTCACGGCCAACACCGTCCTTTCCGTTCTTGCCGCCGACTACCCGGTCGACAAGCTCTCGTGCTACGTCT CCGACGACGGCGGGTCCCTCCTCACCTTCGAGGCCATGGCGGAGGCCGCCAGCTTCGCCAGGGTTTGGGTTCCCTTTTGCAAGAAACATGGGGTGGAACC CAGAAACCCAGAGTCTTACTTCAGGCTGAAGCGGGACCCGTACAAGAACAAAGTCCGGGCCGATTTTGTGAGGGACCGGCGGCGCGTGAAGAGGGAGTAC GATGAGTTTAAGGTGTGTATTAATGGTCTGCCGGACTCGATTCGCCGGCGGTCGGACGCGTACAATACACACGAGGAGATTAAGGCGGTGAGGAAGATTA AGGAGAGGGGAGATGATGACGAGGGGATGGAGCGGGTCCAGGTTCCGAGAGCCACGTGGATGGCTGATGGGACCCACTGGGCTGGCACATGGAACCCTGG TTCGACCGGGCATAACCGAGCTGACCATTCGAGCATCATCCAGGTAATGTTGCAGCCTCCGAACGACGAGTCGTTTAAATTGGGACCCAACGAAGACGAC TCAACCGATCCAACCGAAACTGAAACTCGATTACCCACCCTAGTCTACGTGTCTCGCGAGAAGCGCTCCGGCTACGAACACAACAAGAAAGCCGGCGAAA TGAACGCCATCGTCCGAGTCTCGGCGATCATGTCCAACGGCCCTTTCGTTCTCAACCTCGACTGTGACCACTACGTCCACAACTCCAAAGCCCTCCGAGA AGGAATCTGTTACATGCTCGACGGTGGCAGTCAAGACATCTGCTACGTCCAGTACCCACATAGGTACGAAGGGGTCGACCCGTCGGACCGATACGCGAAT CGAAATTCGGTCTTCTTCGACGTTAATATGCGAGCTTTGGATGGAATTCAGGGCCCTGTTTATGTTGGGACTGGGTGCTTATTCCGCCGGACTGCTATTT ACGGGTTTGATCCGCCGGAGAAGAAGAAGAAGTCGACGGCGGCGGGTAACTCTGCTGCCGCCCCTGTTTTTGACTCTGGTTCGGATCAAATGAGTCGATC TTCTAGTGTGATGGATAGCATGGATGATGATTTGGCGATGAATGCTGATCTTATACCGAAGAAGTTTGGGAATTCGAGTTTGTTTGTCGATTCAATTCGG GTCGCTGCTTACCAAGCGCTTCCGCTGGCTGATCATCCTTCTGTAATTAACGGGCGTGCTCAAGGTACGTTGATTGGTCCACGAGAGCCGTTAAATTCGT TGATGATTGGAGAAGCGGTGAATGTGATCTCTAGCTGGTATGAGGACAAGACGGAGTGGGGAGGGAAGGTGGGTTGGACATATGGTTCGACCACAGAGGA TGTGGTTACGGGGTACAGGATGCATGAGAGGGGTTGGAGGTCGGTCTACTGCGTGACCAAACCAGATGCATTTCGTGGCATAGCCACGATCAACTTGACT GACCGGCTCCATGAGGTTTTGAGATCAGCAACGGGGTCGGTCGAGATTATCTTCTCGCGCAACAATGCGCTCTTAGCAAGTCACAAGCTCAAATTCCTCC AGCGCATCGCGTATCTCAATGTAGGGATCCGTCCCTTCTCATCGATCTTCCTCCTCGTTTACTGCTTCTTGCCAGCTCTCTCACTCTTCACTGATAAGCT CATTGTCCCGTCCCTGGGTGTGGACTTCTTAGTCTACCTGCTGATCGTGACCGTGACACTTGCCGTACTGGCAATCCTCGAAATTAAATGGTCAGGGGTG GCACTAGAGGAGTGGTGGAGGGACGAGCAATTCTGGGTCATCGGGGGGACGAGTGCACATCTTGCAGCCGTGGTACAAGGCATGTTGAAATCGGTCATCG GGGTTGAAATCGCGTTGAATCAAACGATGCCCAAACCCAAAAAGAGTAGAAGTAACGATGATAACGACCGAGCTGACGAGTTCGCGGAGATGTACCTCAT CAAGTGGACATCACTCATGATCCCTCCTTGCACCATCATTATAGTGAACATTGTGGGGATTGCAATAGGATTCTCTAGGACTATATCTAGTGACACATCA AGGTGGGAGAATTTCATAGGAGGTGCGTTGTTTAGCTTGTGGGTGCTTGTTCACCTCTACCCTTTTGCCAAAGGGTTGATGGGAAAACGCGGGAAGACAC CCACCATTGTATTTGTGTGGTCCGGGCTCATCTCCATATGCATTTCCTTGCTTTGGGTTGCTCTTAACCCGGCCGCCACCAAAACTCGAATCGGTTGA
AA sequence Show only first row Show all	>Lus10012119 pacid=23154936 polypeptide=Lus10012119 locus=Lus10012119.g ID=Lus10012119.BGIv1.0 annot-version=v1.0 MATNQGRRPPSLAVHSNYRDFDSSEIGNSSVESATTYTVHIPPTPDNHRRLTKDQMEHLSIDSSTSSSPASFLPTGRNPSGGLTMTVSRPNRSDSGPGLC QVRGCDARAMSDGGGAAVFPCRCEYRICGECFKEAVEEEGGGCPGCKLPYEKGRMGQLDRTLTVVDNNGRIQSEFDSSENAVGEVDLVGDKERKPLTRSF GISASIIVPYRLLIIIRVIALAMFLEWRVTNPNEEAIWLWGMSVICELWFSFTWLLDQLPKLRPVKRVVDLDLLTEKFETPYASAVGKSDLPGIDVIVST SSDPDKDPPLVTANTVLSVLAADYPVDKLSCYVSDDGGSLLTFEAMAEAASFARVWVPFCKKHGVEPRNPESYFRLKRDPYKNKVRADFVRDRRRVKREY DEFKVCINGLPDSIRRRSDAYNTHEEIKAVRKIKERGDDDEGMERVQVPRATWMADGTHWAGTWNPGSTGHNRADHSSIIQVMLQPPNDESFKLGPNEDD STDPTETETRLPTLVYVSREKRSGYEHNKKAGEMNAIVRVSAIMSNGPFVLNLDCDHYVHNSKALREGICYMLDGGSQDICYVQYPHRYEGVDPSDRYAN RNSVFFDVNMRALDGIQGPVYVGTGCLFRRTAIYGFDPPEKKKKSTAAGNSAAAPVFDSGSDQMSRSSSVMDSMDDDLAMNADLIPKKFGNSSLFVDSIR VAAYQALPLADHPSVINGRAQGTLIGPREPLNSLMIGEAVNVISSWYEDKTEWGGKVGWTYGSTTEDVVTGYRMHERGWRSVYCVTKPDAFRGIATINLT DRLHEVLRSATGSVEIIFSRNNALLASHKLKFLQRIAYLNVGIRPFSSIFLLVYCFLPALSLFTDKLIVPSLGVDFLVYLLIVTVTLAVLAILEIKWSGV ALEEWWRDEQFWVIGGTSAHLAAVVQGMLKSVIGVEIALNQTMPKPKKSRSNDDNDRADEFAEMYLIKWTSLMIPPCTIIIVNIVGIAIGFSRTISSDTS RWENFIGGALFSLWVLVHLYPFAKGLMGKRGKTPTIVFVWSGLISICISLLWVALNPAATKTRIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16910		ATCSLD2	cellulose-synthase like D2 (.1...		Lus10012119 [exp]	0	1
					Lus10039973 [exp]	8.5	0.6521
					Lus10020988 [exp]	10.2	0.6115
AT4G39700			Heavy metal transport/detoxifi...		Lus10019676 [exp]	10.2	0.5829
					Lus10037862 [exp]	12.2	0.6376
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10012823 [exp]	12.3	0.7014
					Lus10024734 [exp]	12.6	0.6316
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10038796 [exp]	13.0	0.5598
AT2G26730			Leucine-rich repeat protein ki...		Lus10002360 [exp]	19.8	0.5733
AT5G48540			receptor-like protein kinase-r...		Lus10006752 [exp]	20.6	0.5861
AT2G48140		EDA4	embryo sac development arrest ...		Lus10042613 [exp]	21.4	0.5626

Compare expression of checked genes

Lus10012119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.