Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31910 602 / 0 GHMP kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010422 [exp] 875 / 0 AT1G31910 690 / 0.0 GHMP kinase family protein (.1.2) Lus10012122 [exp] 786 / 0 AT1G31910 605 / 0.0 GHMP kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098100 [exp] 690 / 0 AT1G31910 684 / 0.0 GHMP kinase family protein (.1.2) Potri.001G135500 [exp] 660 / 0 AT1G31910 593 / 0.0 GHMP kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012121 pacid=23154944 polypeptide=Lus10012121 locus=Lus10012121.g ID=Lus10012121.BGIv1.0 annot-version=v1.0 ATGGCCGTAGTTGCTTCAGCTCCTGGGAAAGTGTTGCTGACGGGAGGATACTTGATTCTGGAGAGACCCAATTCCGGGATCGTGCTGAGCACAAGTGCCA GATTCTACGCCATTGTTAAACCTCTTCACGACCGGCTGGACCCCGCTAGCTGGGCATGGAGTTGGTCTGATGTGAAGTTGACTTCTCCCCAGCTGGGGAG GGAGAGCATGTACAAGTTGAATCTCAAGAATTTAACTCTTCAGTCTGTTTCCTCCAGCGACTCGAGGAATCCTTTTGTCGAACACGCTCTGGAGTATGCT ATTGCAGCTGCCAATGTTACCTTTGATAGAACTAAGAAGGATGCCTTGAACAAACTTCTCTTGCAAGGTCTTGACATCACAATATTGGGCAGTAACGACT TCTACTCGTATCGTAATCAGATCGAAGCTCGTGGTTTACCTTTGACTCCAGAATCACTGGCTGCACTGCCACCCTTCATGTCCATCACATTCAATGCTGG TGATGACACAAATGGGCCGAACTGCAAGCCCGAAGTTGCGAAGACAGGGCTCGGATCCTCTGCATCAATGACCACAGCAGTGGTCGCTGCACTGCTCAAG TACTTCAGACTAGTGGATCTTGTCGAAACTTTGGATCTTGACGTGGTTCATATCATAGCTCAAAGCGCTCACTGCATTGCCCAAGGGAAAGTTGGCAGTG GGTTCGATGTCTGTTCTGCTGTTTACGGTAGCCATCGCTATGTCCGGTTTTCGCCCTCCGTGCTTTCTTCTGCTCAGGATGCGGCGAGAGGAGTGCCATT ACAGGAAGTCATAGTTGATATCCTGAAAGGAGATTGGGACCATGAGAGGACCAAGTTCTCTTTGCCACCATTGATGACCCTGTTACTAGGAGAACCAGGA AGCGGAGGATCGTCAACTCCATCAATGGTAGGGGCGGTGAAAAGATGGCAGAAAGCTGATCCGCAGAAGTCCGGAGAAACATGGAATCAGTTATCAGCAG CAAATTCAGCTCTCGAAATGCAGCTTAAGGCTTTAAGCAAGCTTGCAGAAGAGCATTGGAGTTCATATAAATGCGTGATTGATAACTGCAGCGTAACGAA GACTGAGAAGTGGGCCGAGCAAGCTGCAGATCTCAACCAAGAAGCTGTGGTTAAAGCATTACTGGCATCACGAGCAGCCATGCTCGAGATCAGAAAGCTT ATGCGGCAGATGGGAGAAGCTGCTGGTGTTCCGATAGAGCCTGAATCCCAGACCAAACTCTTGGATGCTACGACGAACGTGGAAGGAGTTCTTCTGGCCG GAGTCCCCGGTGCTGGAGGTTTCGACGCCATATTCGCCGTCACGTTGGGTGACTCCGGCAGCAACGTTGCAGCAACTTGGAGCTCATTCAACGTCCTAGC ATTGCTGGTAAGAGAAGACCCATGCGGGGTTCGTATCGAGAATGGCGACCCGAGAAGCCAAGAGATCGCGTGTGGAGTCACTGCATTAAGCATCCAGTAG
AA sequence Show only first row Show all	>Lus10012121 pacid=23154944 polypeptide=Lus10012121 locus=Lus10012121.g ID=Lus10012121.BGIv1.0 annot-version=v1.0 MAVVASAPGKVLLTGGYLILERPNSGIVLSTSARFYAIVKPLHDRLDPASWAWSWSDVKLTSPQLGRESMYKLNLKNLTLQSVSSSDSRNPFVEHALEYA IAAANVTFDRTKKDALNKLLLQGLDITILGSNDFYSYRNQIEARGLPLTPESLAALPPFMSITFNAGDDTNGPNCKPEVAKTGLGSSASMTTAVVAALLK YFRLVDLVETLDLDVVHIIAQSAHCIAQGKVGSGFDVCSAVYGSHRYVRFSPSVLSSAQDAARGVPLQEVIVDILKGDWDHERTKFSLPPLMTLLLGEPG SGGSSTPSMVGAVKRWQKADPQKSGETWNQLSAANSALEMQLKALSKLAEEHWSSYKCVIDNCSVTKTEKWAEQAADLNQEAVVKALLASRAAMLEIRKL MRQMGEAAGVPIEPESQTKLLDATTNVEGVLLAGVPGAGGFDAIFAVTLGDSGSNVAATWSSFNVLALLVREDPCGVRIENGDPRSQEIACGVTALSIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31910			GHMP kinase family protein (.1...		Lus10012121 [exp]	0	1
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	6.9	0.9177
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	7.7	0.9161
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	9.6	0.8525
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021047 [exp]	15.6	0.9142
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	23.6	0.9050
AT3G21710			unknown protein		Lus10027176 [exp]	24.8	0.8933
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	28.9	0.8945
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	29.3	0.8825
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10020606 [exp]	31.1	0.8688
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	37.5	0.8936

Compare expression of checked genes

Lus10012121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.