Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31910 539 / 0 GHMP kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012121 [exp] 820 / 0 AT1G31910 691 / 0.0 GHMP kinase family protein (.1.2) Lus10010422 [exp] 809 / 0 AT1G31910 690 / 0.0 GHMP kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G098100 [exp] 625 / 0 AT1G31910 684 / 0.0 GHMP kinase family protein (.1.2) Potri.001G135500 [exp] 595 / 0 AT1G31910 593 / 0.0 GHMP kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012122 pacid=23154931 polypeptide=Lus10012122 locus=Lus10012122.g ID=Lus10012122.BGIv1.0 annot-version=v1.0 ATGAGCAAAAGTACTACTTCATTTGATCTGATCGCAATCTCGAAGGTTTCCAGGCATTCGTTTAGTTACGACTGCGATCTGTTTGAAATGAATGAGCAAA GTTGGTCTGATGTGAAGTTGACTTCTCCCCAGCTGGGGAGGGAGAGCATGTACAAGTTGAATCTCAAGAATTTAACTCTTCAGTCTGTTTCCTCCAGTGA CTCGAGGAATCCTTTTGTCGAACACGCTCTGGAGTATGCTATTGCAGCTGCCAACGCTACCTTTGATAGAACTAAGAAGGATGCCTTGAACAAACTTCTC TTGCAAGGTCTTGACATCACGATATTGGGCGGTAACGACTTCTACTCGTATCGTAATCAGATCGAAGCTCGCGGTTTACCTTTGACTCCAGAATCACTGG CTGCACTGCCACCCTTCATGTCCATCACATTCAATGCTGGTGATGACACAAATGGGCCGAACTGCAAGCCCGAAGTTGCCAAAACAGGGCTCGGATCCTC GGCAGCAATGACCGCAGCAGTGGTCGCTGCACTGCTCAAGTACTTCCGACTAGTGGATCTTGTCGAAACTTCGGATCTCGACGTGGTTCATATCATAGCT CAAAGTGCTCACTGCATTGCTCAAGGGAAAGTTGGCAGCGGGTTCGATGTCAGCTCTGCTGTCTACGGTAGCCATCGCTATGTCCGGTTTTCACCCTCCG TGCTTTCATCTGCTCAGGATGCGGCGAGAGGAGTGCCATTACAGGAAGTCATAGTTGATATCCTGAAAGGAGATTGGGACCATGAGAGGACCAAGTTCTC TTTGCCACCATTGATGACCCTGTTACTAGGAGAACCAGGAAGCGGAGGATCGTCAACTCCATCAATGGTAGGCGCGGTGAAAAGATGGCAGAAAGCTGAT CCGCAGAAGTCCGGAGAAACATGGAATCAGTTATCAGCAGCAAATTCAGCTCTCGAAATGCAGCTTAAGGCTTTAAGCAAGCTTGCAGAAGAGCATTGGA GTTCATATAAATGCGTGATTGATAACTGCAGCGTAACGAAGACTGAGAAGTGGGCCGAGCAAGCTGCAGATCTCAACCAAGAAGCTGTGGTTAAAGCATT ACTGGCATCACGAGCAGCCATGCTCGAGATAAGAAAGCTTATGCGGCAGATGGGAGAAGCTGCTGGTGTTCCGATAGAGCCTGAATCCCAGACCAAACTC TTGGATGCTACGACGAACGTGGAAGGAGTTCTTCTGGCCGGAGTCCCCGGTGCTGGAGGTTTCGACGCCATATTCGCCGTCACGTTGGGTGACTCCGGCA GCAACGTTGCAGCAACTTGGAGCTCATTCAACGTCCTAGCATTGCTGGTAAGAGAAGACCCATGCGGGGTTCGTATCGAGAATGGCGACCCGAGAAGCCA AGAGATCGCGTGTGGAGTCACTGCATTAAGCATCCAGTAG
AA sequence Show only first row Show all	>Lus10012122 pacid=23154931 polypeptide=Lus10012122 locus=Lus10012122.g ID=Lus10012122.BGIv1.0 annot-version=v1.0 MSKSTTSFDLIAISKVSRHSFSYDCDLFEMNEQSWSDVKLTSPQLGRESMYKLNLKNLTLQSVSSSDSRNPFVEHALEYAIAAANATFDRTKKDALNKLL LQGLDITILGGNDFYSYRNQIEARGLPLTPESLAALPPFMSITFNAGDDTNGPNCKPEVAKTGLGSSAAMTAAVVAALLKYFRLVDLVETSDLDVVHIIA QSAHCIAQGKVGSGFDVSSAVYGSHRYVRFSPSVLSSAQDAARGVPLQEVIVDILKGDWDHERTKFSLPPLMTLLLGEPGSGGSSTPSMVGAVKRWQKAD PQKSGETWNQLSAANSALEMQLKALSKLAEEHWSSYKCVIDNCSVTKTEKWAEQAADLNQEAVVKALLASRAAMLEIRKLMRQMGEAAGVPIEPESQTKL LDATTNVEGVLLAGVPGAGGFDAIFAVTLGDSGSNVAATWSSFNVLALLVREDPCGVRIENGDPRSQEIACGVTALSIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	0	1
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	1.4	0.9664
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	3.0	0.9454
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	4.2	0.9548
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	8.0	0.9251
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	11.0	0.9301
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	12.0	0.9392
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	13.0	0.9343
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	13.4	0.9431
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	13.6	0.9406
AT2G04790			unknown protein		Lus10006402 [exp]	13.9	0.9087

Compare expression of checked genes

Lus10012122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.