Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37678 57 / 4e-10 PAT3, FRY1, FHY1 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1) AT5G02200 51 / 6e-08 FHL far-red-elongated hypocotyl1-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010421 [exp] 359 / 8e-118 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087300 [exp] 91 / 5e-22 AT2G37678 57 / 2e-09 PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1) Potri.016G100100 [exp] 73 / 2e-15 AT2G37678 / PHYTOCHROME A SIGNAL TRANSDUCTION 3, far-red elongated hypocotyl 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012123 pacid=23154986 polypeptide=Lus10012123 locus=Lus10012123.g ID=Lus10012123.BGIv1.0 annot-version=v1.0 ATGGCGATGATGATGGTTGGAGAAGATAAATATAACCCGCCGGAATTTAACAGGAAAAGGAAGTTAACAGCAGACCAATTGCTTCTTCCTGTAGCCAAGC ATGAATGTCTTCGCGTAATCAACGAAAATGCGCAAGTGAAATCTGCTGAGGATAACAGGATGAAGTCTGATCATGAATCTGGAAACGATTGCAATAGCTT CATCAATAATGTAGATTCTTCATCAGACTGTACCATGTCATTATCTGAACCTAAATTTGAGGCTTCGAAGATATGCCCGAGTAGTACTCTATCATTCAAC TGGTCTTCAGAGAGTTGCAACAAGGATGATCCTCAATGCTCGTCAGACAATGATGCAACGTCATCATTAGCAAGAGATTACAACAAGTTCCAAGAAAGCG AGGAAATGCTCGATTACGAGGACCATTTCAGTTATGCTTATACCGAATACAATGGTAGCGGCGGTGGTGAGGATGAAGACCTTAATAGTGATCTCTGTGC CAATTCTGTGAACCCTCGCGTCTATCTCCTGTCTTCATCTGGAGGATGGACAGTTAAGCAAGATGCTCAATCAGGAACAAGGGCGCCGACGATAGATCAA GAGTTCGAGCAGTATTTTTCTGGTCTTATGCTTCAGTAG
AA sequence Show only first row Show all	>Lus10012123 pacid=23154986 polypeptide=Lus10012123 locus=Lus10012123.g ID=Lus10012123.BGIv1.0 annot-version=v1.0 MAMMMVGEDKYNPPEFNRKRKLTADQLLLPVAKHECLRVINENAQVKSAEDNRMKSDHESGNDCNSFINNVDSSSDCTMSLSEPKFEASKICPSSTLSFN WSSESCNKDDPQCSSDNDATSSLARDYNKFQESEEMLDYEDHFSYAYTEYNGSGGGEDEDLNSDLCANSVNPRVYLLSSSGGWTVKQDAQSGTRAPTIDQ EFEQYFSGLMLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	0	1
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10012939 [exp]	2.0	0.9256
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	2.0	0.9179
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	3.5	0.9094
					Lus10043038 [exp]	3.7	0.8857
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	3.9	0.9111
AT5G15070			Phosphoglycerate mutase-like f...		Lus10008307 [exp]	5.1	0.8689
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	5.7	0.8843
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	7.3	0.8940
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	7.9	0.8820
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	8.1	0.9048

Compare expression of checked genes

Lus10012123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.