Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31930 1019 / 0 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 644 / 0 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 494 / 4e-162 XLG2 extra-large GTP-binding protein 2 (.1) AT2G26300 169 / 9e-46 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT2G46380 44 / 0.0005 Protein of unknown function (DUF3133) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010421 [exp] 1481 / 0 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10019655 [exp] 647 / 0 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 600 / 0 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 585 / 0 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10021012 [exp] 582 / 0 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10003115 [exp] 162 / 4e-43 AT2G26300 663 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10004784 [exp] 160 / 2e-42 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10009897 [exp] 51 / 2e-06 AT4G34390 52 / 3e-07 extra-large GTP-binding protein 2 (.1) Lus10024210 [exp] 50 / 4e-06 AT1G31930 52 / 2e-07 extra-large GTP-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G135300 [exp] 1207 / 0 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 1205 / 0 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 910 / 0 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 903 / 0 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 654 / 0 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 647 / 0 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 553 / 0 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 550 / 0 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.006G219500 [exp] 169 / 7e-46 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 152 / 2e-39 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10012124 pacid=23154920 polypeptide=Lus10012124 locus=Lus10012124.g ID=Lus10012124.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGAGCTGGAAAGAATTAGTGAGAAAGATGCTTCCTCCAGGTGCATCTCTCCCGGAAGACGAATCCAAGCTTGATTACTCCATAGCTGTCG AGTACGTCGGCCCCCCAGTTGGTTACGAAGTTCCCAAGGTCGAGCCACTTGATGTAAGTCCACACGCGATCATCCCCACTGCAGAGCCGCTCGAAATGTT GTCGAATGGATCAGCTCCTCCGAACGCATCAACTCCCGTTATCGATCCTATACCTTTGCCAGTTTCCTCTTACGTTGCCGGCTTCACGAACTCATCCTCT CCTGCTCAGAGTCCTCGACCATCCGCAAGCTCGGAATCGGTGGTATCGGTCTTGCAGAACCCCGATTCCTCTTCAGCGTCAGGCTCAGGTTCCCCCCGTT CGGTTAACAACCACCCCCCTCCTCCAAGACGAGGAGGGAGGGTTCCCGTCGTTAAGTTCAACACTCGGGTTGATTCGTCGGTCAGCAAGAGTTCGGACAT GGATAGACCGGTTTATCCCGAGTCTGTGGTTGGGGTTTCTAAAAAGAAGAAGAGTAGGGTTTGCTATAGGTGTGGAAGAGGGAAATGGGAAGTGAAAGAG TCGTGCTTGGTCTGCGATGCCAAGTACTGCAGCAACTGTGTGCTCAGGGCGATGGGATCGATGCCGGAAGGACGTAAGTGCGTGACTTGCATTGGGGAGC CGATTGACGAGTCGAAAAGGTCCAAGCTAGGGAGGCATTCGCGTGTCTTGTCCAGATTGCTGAGTGCTCAGGAAGTTAAGCACATTATGAAATCGGAGAA AGAATGTGCTGCTAATCAGCTTCGTCCCGAGCAGCTTATTATCAATGGCTTCCCTTTGAAGCCGGAGGAGATGTCTGAGTTGCTTGGATGTCCTTTGCCT CCGAAGAAATTGAAACCCGGTCGGTATTGGTACGACAAAGAATCCGGTTTATGGGGGAAGGAGGGAGAAAAACCAGATAGAGTCATCAGTTCCAACTTGA ACTTCACAGGGAAGCTAAGTCCCGATGCAAGCAACGGTAACTCTGAAGTTTACATGAACGGACGAGAAATTACGAGATGGGAGCTAAAAGTGCTAAGACT GGCGAAGGTGCAATGTCCACGCGATACGCATTTTTGGGTCTACGATGATGGTCGTTACGAGGAGGAAGGTCAGAACAATATAAGGGGTAACATCTGGGAA AAGGCATTGACGCGGTTCATGTGCATGCTCTTCTCTTTGCCTGTTCCCCATGGCCAACCTGTTGGGCAGAGAGATGAGCCTAGTACTTACACTACAGTTC CGAATTATTTGGAGTCGAAAAGAGTCCAGAAGCTTCTTCTCCTCGGCCTTCCCGGGTCGGGAACCAGCACGATTTTCAAGCAGGCCAAGTTCTTGTACGG GAACAGGTTCACGGAAGAAGAGCTGCAAGATATTAAGCTAATGATACAGAGCAATATGTACAGATACCTCAGCATCTTGCTCGATGGACGCGAACGCTTC GAGGAGGAGGCATTGTCGAAGATGGAAACCGGAGATCGCGACTCTGAAGCCGAAGAAGGCGGCGAGTCGAGCGAAACATACCACTGTGTCTATTCCATCA ACCCAAAGTTGAAGAACTTCTCTGACTGGCTACTCGACATCATTGCGACCGGAGATTTAGACGCGTTCTTCCCTGCTGCGACACGTGAGTATGCTCCGTT GGTTGAAGAGCTGTGGAAAGATCCTGCGATCCAGGAGACGTATAAGAGGAAAGACGAGCTTCACTTCCTTTCAGATGTCTCGGAGTACTTCTTAAGCCGG GCTGTAGAGGTCTCAAGTAATGAGTACGAGCCAACCGAGCGAGACATCCTCTACGCGGAAGGGGTGACACAGGGAAATGGTTTGGCATGCATCGAGTTCT CGCTTGACGATCGGAGCCCAATGTCCGAGGTGTACACTGACAATCTCGAATCTTCTTCGCCTCCTCTGACCAAGTACCAGCTGATAAGGGTGAACGCGAA GGGAATGAACGAAGGGTGCAAGTGGGTGGAAATGTTCGAAGACGTACGAGCTGTGGTGTTCTGCGTCTCGCTCAACGACTACGACCAGGTGTACCTAGCA CCCGAGGGGGGAGGCGGCACCATAACGGGGAGCGGATCCTTGCTACAGAACAAAATGATGCACACCAAGGACCTCTTCGAGTCGATGATCCGGCACCCTA GCTTCAAGGACACACCATTCGTGCTGGTATTCAACAAGTACGACCTCTTCGAAGAGAAGGCCAGCCGGGTGAACCTGAGCGCCTGCGAGTGGTTCTCGGA CTTCAGCCCCGTGAGGCCGCACCACAACCAGCAGTCGATGGCCCACCAGGCGTACTACTACGTAGCGATGAAGTTCAAGGACCTGTACGCCTCGCTGACC GGTCGCAAGCTGTTTGTGTGGCAAGCGAGGGCGAGGGACCGGGTGACTGTCGACGAGGGGTTCAAGTACATACGGGAGGTGCTCAAGTGGGACGAGGAGA AGGAAGACAACTACTTTGGTGGCCCTGAGGATTCTTGTTACAGTACTGATATGAGCTCTTCTCCATTTGTAAGGCAAGAGTGA
AA sequence Show only first row Show all	>Lus10012124 pacid=23154920 polypeptide=Lus10012124 locus=Lus10012124.g ID=Lus10012124.BGIv1.0 annot-version=v1.0 MEGESWKELVRKMLPPGASLPEDESKLDYSIAVEYVGPPVGYEVPKVEPLDVSPHAIIPTAEPLEMLSNGSAPPNASTPVIDPIPLPVSSYVAGFTNSSS PAQSPRPSASSESVVSVLQNPDSSSASGSGSPRSVNNHPPPPRRGGRVPVVKFNTRVDSSVSKSSDMDRPVYPESVVGVSKKKKSRVCYRCGRGKWEVKE SCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGEPIDESKRSKLGRHSRVLSRLLSAQEVKHIMKSEKECAANQLRPEQLIINGFPLKPEEMSELLGCPLP PKKLKPGRYWYDKESGLWGKEGEKPDRVISSNLNFTGKLSPDASNGNSEVYMNGREITRWELKVLRLAKVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWE KALTRFMCMLFSLPVPHGQPVGQRDEPSTYTTVPNYLESKRVQKLLLLGLPGSGTSTIFKQAKFLYGNRFTEEELQDIKLMIQSNMYRYLSILLDGRERF EEEALSKMETGDRDSEAEEGGESSETYHCVYSINPKLKNFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKDELHFLSDVSEYFLSR AVEVSSNEYEPTERDILYAEGVTQGNGLACIEFSLDDRSPMSEVYTDNLESSSPPLTKYQLIRVNAKGMNEGCKWVEMFEDVRAVVFCVSLNDYDQVYLA PEGGGGTITGSGSLLQNKMMHTKDLFESMIRHPSFKDTPFVLVFNKYDLFEEKASRVNLSACEWFSDFSPVRPHHNQQSMAHQAYYYVAMKFKDLYASLT GRKLFVWQARARDRVTVDEGFKYIREVLKWDEEKEDNYFGGPEDSCYSTDMSSSPFVRQE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	0	1
AT2G16790			P-loop containing nucleoside t...		Lus10041345 [exp]	1.0	0.8880
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	4.2	0.8748
AT2G38000			chaperone protein dnaJ-related...		Lus10021120 [exp]	10.0	0.7885
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10034640 [exp]	10.8	0.8755
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	20.8	0.8132
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	22.2	0.7728
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10026033 [exp]	23.0	0.7978
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	25.9	0.8251
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	28.8	0.8309
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	29.0	0.8094

Compare expression of checked genes

Lus10012124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.