Plant FIBer expression Database

Lus10012125 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010420
[exp]
557 / 0 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G137000
[exp]
208 / 2e-65 ND /
PFAM info
Representative CDS sequence
>Lus10012125 pacid=23155000 polypeptide=Lus10012125 locus=Lus10012125.g ID=Lus10012125.BGIv1.0 annot-version=v1.0
ATGGCGAAAGGAGAGGAACTGTGGGACGATTCCGCCCTCGTCGACGCTTTCAATGACGCCATGACCAAGTACAAGGTCAAGAAATATCACGGCAAGAATG
GTCAGGGAAGTTCAGCTGATAGAGAAGAAGTTCAAGCTGACAGTGAGAATACCGCTTCTGTTGTGGAGCAAGGCCATGGCGTTACGAGTGAGGTGCAGGA
AACCAGCAAGGATATATCACAACCTACAGTGGAGCTCTTGGACGGAGAAAAAATTGGACCATTGAATGAAAATCACTTTGCAGAATCATTTGGCCACGAG
CAACCATTAGATTTGACTACCAGCTTGAATGCTCAAGCTTCCACCACTGATTACAACGAACAAGATGCAGAAGCTTACAACCAGTTACTGAGCCAATATT
ACGAGCTGGAAGAGAAAAGGCAAACCATTCTACAGCAGCTTCAGCAACTAGGTGACCATTACTATCAGCAACCTGCTGAAGGCTCTACCTCTCAAGACCA
ATCAGTCCCGGCTAACCAACCACCTTCTCTCGCAACCTGCACTTGTTACTCTTGCCCTTATGCTAGTACTTGTCCGGCAGTTCCATGCTTGTCTCTTCCT
GCTTGTGCATGGGGTGCCGAATGTGGGAGCAAGTTGGGTACTGATTCTGCTACGTTGACATGTTGCGGAATGTCTGGTTCTCTCGGAGAGAATGCCATTG
TCCAAACAGCAATGGAAGCTTCTGGTAGAGCAATTTCGTCCACGAAAGAGAAAGCCTTCAACAATAACCCCGTAAAAGATGGAGACTTTCAGGGATTGGC
ACAAGAACCCGGCTCCGAAACAGATCTTTGTGCAGTCTTAAACGCCTGGTATTCTGCTGGTTTTTACACTGCCAAGTATCTTACAGAGCAATCCATGGCT
AAGAAGTAA
AA sequence
>Lus10012125 pacid=23155000 polypeptide=Lus10012125 locus=Lus10012125.g ID=Lus10012125.BGIv1.0 annot-version=v1.0
MAKGEELWDDSALVDAFNDAMTKYKVKKYHGKNGQGSSADREEVQADSENTASVVEQGHGVTSEVQETSKDISQPTVELLDGEKIGPLNENHFAESFGHE
QPLDLTTSLNAQASTTDYNEQDAEAYNQLLSQYYELEEKRQTILQQLQQLGDHYYQQPAEGSTSQDQSVPANQPPSLATCTCYSCPYASTCPAVPCLSLP
ACAWGAECGSKLGTDSATLTCCGMSGSLGENAIVQTAMEASGRAISSTKEKAFNNNPVKDGDFQGLAQEPGSETDLCAVLNAWYSAGFYTAKYLTEQSMA
KK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012125
[exp]
0 1
AT1G27650 C3HZnF ATU2AF35A U2 snRNP auxiliary factor smal... Lus10020540
[exp]
11.5 0.8103
AT1G24510 TCP-1/cpn60 chaperonin family ... Lus10006240
[exp]
14.6 0.8267
AT4G36750 Quinone reductase family prote... Lus10026035
[exp]
16.7 0.8189
AT5G09810 ACT2/7, ACT7 actin 7 (.1) Lus10005820
[exp]
18.2 0.7866
AT1G08480 SDH6 succinate dehydrogenase 6, unk... Lus10013373
[exp]
20.5 0.8111
AT1G30890 Integral membrane HRF1 family ... Lus10027039
[exp]
23.2 0.8217
AT3G22110 PAC1 20S proteasome alpha subunit C... Lus10042145
[exp]
25.3 0.8135
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Lus10003523
[exp]
32.5 0.7841
AT4G39820 Tetratricopeptide repeat (TPR)... Lus10025185
[exp]
47.7 0.7882
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Lus10026567
[exp]
52.0 0.7938

Lus10012125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.