Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32220 176 / 1e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10730 97 / 5e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 92 / 3e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010419 [exp] 223 / 6e-73 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 174 / 4e-57 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 92 / 8e-23 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 84 / 1e-19 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 39 / 0.0008 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136900 [exp] 200 / 6e-65 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 99 / 7e-26 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 99 / 1e-25 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 98 / 3e-25 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012126 pacid=23154977 polypeptide=Lus10012126 locus=Lus10012126.g ID=Lus10012126.BGIv1.0 annot-version=v1.0 ATGCAAAGGATCAATGGGGAAGCCAACATCGTAGCAGTAAATGCTGCCAAAGACTACGGCGTGCCCAAGTTCATCATGATATCAGTCCATGACTACAACC TCCCATCATTCCTGCTCCAATCCGGATACTTCACCGGGAAAAGGAAAGCCGAGTCGGAGGTCCTTTCCAAGTATCCAAGCTCAAGCGTCATTCTGAGACC GGGTTTCATCTACGGGAAGAGAAGAGTGGACGGGTTCGAGATACCACTGGACGCAGTCGGGCAGCCATTGGAAAAGATTCTTGGAGCTGTTAGCAACTTC ACCAGACCCTTGAGTGCTCTTCCAGCGTCTGATTTGTTGCTCGCGCCTCCAGTAAGTGTCGATGATGTTGCGCTTGCGGTGATCGATGCTGTTGGGGATG ACGATGTTTTCGGCGTACTCACCATTGAACAGATCAAGGAAGCTGCTGCTAAAGTCAAGATATGA
AA sequence Show only first row Show all	>Lus10012126 pacid=23154977 polypeptide=Lus10012126 locus=Lus10012126.g ID=Lus10012126.BGIv1.0 annot-version=v1.0 MQRINGEANIVAVNAAKDYGVPKFIMISVHDYNLPSFLLQSGYFTGKRKAESEVLSKYPSSSVILRPGFIYGKRRVDGFEIPLDAVGQPLEKILGAVSNF TRPLSALPASDLLLAPPVSVDDVALAVIDAVGDDDVFGVLTIEQIKEAAAKVKI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	0	1
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	1.4	0.9548
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	2.8	0.9235
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10017974 [exp]	4.0	0.9357
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10005863 [exp]	4.6	0.9257
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10021496 [exp]	5.7	0.9324
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10022420 [exp]	6.0	0.9259
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	7.2	0.9103
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	8.1	0.9267
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	9.2	0.9067
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	10.8	0.9233

Compare expression of checked genes

Lus10012126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.