Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32220 105 / 6e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 48 / 8e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10730 47 / 2e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010419 [exp] 203 / 6e-65 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020108 [exp] 66 / 5e-13 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 59 / 1e-10 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136900 [exp] 123 / 2e-34 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G268000 [exp] 73 / 1e-15 AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G013400 [exp] 72 / 2e-15 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 52 / 2e-08 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10012127 pacid=23154982 polypeptide=Lus10012127 locus=Lus10012127.g ID=Lus10012127.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCCACGGCCTCGGCCTTCATCGCAGCAATTTCTCCTTCCTCTCTTCGCCGGCCAAAGCTCAGCAAGCTGTGCATCTCGTCGCTTCCGATTG CTCCTTCTCGTCTCTCCTCGAACAACTCTCGTCACCGGGTTCAAGTGAAGTGTAGCTACGCGGAGACGAGCGTGAGAGACGGCTCAGATTCGATCGATGT TGTTGCGAATGTAAAATCCGAGAAGATTGTAGTGTTGGGAGGCAATGGTTTCGTTGGTTCCGCGATATGCAAGGCTGCTGTAGAGAAGGGAATTGAAGTT GTCAGCCTTAGCAGGTCAGGACGTCCAAGTTTGTCTGCTCCATGGGCTGATCAGGTCACTTGGCTCCCAGGCAAGTCCCGAATCCTTTCTGCTGTCTTCG ACTTCTATGGAAGTTGCTCAACAAAAGCTAGTTATTCATCCGTATCGTTAAATCCTCCGAGAAAAGATAGCAAGTTCGTGTTTCCCTTGTCTTGCAGGAG ATGTATTCTACACCAACTGGGATGA
AA sequence Show only first row Show all	>Lus10012127 pacid=23154982 polypeptide=Lus10012127 locus=Lus10012127.g ID=Lus10012127.BGIv1.0 annot-version=v1.0 MASSTASAFIAAISPSSLRRPKLSKLCISSLPIAPSRLSSNNSRHRVQVKCSYAETSVRDGSDSIDVVANVKSEKIVVLGGNGFVGSAICKAAVEKGIEV VSLSRSGRPSLSAPWADQVTWLPGKSRILSAVFDFYGSCSTKASYSSVSLNPPRKDSKFVFPLSCRRCILHQLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012127 [exp]	0	1
AT3G18500			DNAse I-like superfamily prote...		Lus10014775 [exp]	1.0	0.9188
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10037996 [exp]	3.7	0.8892
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	5.2	0.8952
AT5G57960			GTP-binding protein, HflX (.1)		Lus10024287 [exp]	7.3	0.8842
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	8.1	0.8908
AT2G03810			18S pre-ribosomal assembly pro...		Lus10026682 [exp]	10.4	0.8792
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	10.4	0.9061
AT5G59400			unknown protein		Lus10016531 [exp]	12.2	0.8619
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	13.4	0.8524
AT5G59400			unknown protein		Lus10040799 [exp]	13.7	0.8607

Compare expression of checked genes

Lus10012127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.