Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010418 [exp] 189 / 1e-62 ND / Lus10012132 [exp] 186 / 1e-61 ND 38 / 0.001 Lus10010416 [exp] 184 / 4e-61 ND 36 / 0.004 Lus10010417 [exp] 181 / 6e-60 ND 37 / 0.002 Lus10012130 [exp] 166 / 1e-53 ND 39 / 4e-04 Lus10012129 [exp] 159 / 5e-51 ND / Lus10012128 [exp] 155 / 7e-50 ND / Lus10012131 [exp] 154 / 3e-49 ND 36 / 0.005 Lus10010415 [exp] 91 / 5e-24 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141400 [exp] 42 / 4e-05 AT5G40380 390 / 6e-127 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.017G141300 [exp] 41 / 0.0001 AT5G40380 382 / 4e-123 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) Potri.007G120601 [exp] 38 / 0.0008 AT3G22060 199 / 9e-65 Receptor-like protein kinase-related family protein (.1) Potri.007G120300 [exp] 38 / 0.001 AT3G22060 194 / 1e-61 Receptor-like protein kinase-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10012134 pacid=23154974 polypeptide=Lus10012134 locus=Lus10012134.g ID=Lus10012134.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCGCCGACAACCATATACGTGATTGTAACATTAACAGTGATGATGACGTGGGCAGTAGACTGTTACGACGACAACTCTGGAATCTGTCAAG GACCTGAGAACGTCTGCAGGCACAGCCAAAACATGTTGCCGGAAGGGGTCACCCAACAAGACATATCCGACAATTTTCACGCGCGAGCCTTCGATTCTCC AGCTGTTTGCCGCCGTTTAGACTCTCTGTCAGAGGATACCAATTTCAAAATATACGCTTACTTCTCCTGCAGCCTTTCACACTGTTACCGCTGTTACGAC GCCGCCTTCACGCTCCTGAGGACCACATATGGATGTTCCGGTAAAGACGGCGGTTTCGTCACGCTGGATGGCTGTTGCTTAAGGTATGAGACCTACGACT TCTGCGGCGCTAAGAACCACTTGTAG
AA sequence Show only first row Show all	>Lus10012134 pacid=23154974 polypeptide=Lus10012134 locus=Lus10012134.g ID=Lus10012134.BGIv1.0 annot-version=v1.0 MSSPPTTIYVIVTLTVMMTWAVDCYDDNSGICQGPENVCRHSQNMLPEGVTQQDISDNFHARAFDSPAVCRRLDSLSEDTNFKIYAYFSCSLSHCYRCYD AAFTLLRTTYGCSGKDGGFVTLDGCCLRYETYDFCGAKNHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10012134 [exp]	0	1
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	5.7	0.6975
AT1G63300			Myosin heavy chain-related pro...		Lus10017237 [exp]	24.7	0.6747
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	34.7	0.6699
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	40.1	0.6403
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	43.0	0.6405
AT1G03055			unknown protein		Lus10024837 [exp]	68.0	0.6092
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	84.5	0.5898
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10018395 [exp]	88.1	0.5610
AT3G47570			Leucine-rich repeat protein ki...		Lus10016896 [exp]	105.4	0.5615
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10013277 [exp]	112.5	0.5030

Compare expression of checked genes

Lus10012134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.