Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 76 / 7e-16 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 67 / 1e-12 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 65 / 3e-12 SGNH hydrolase-type esterase superfamily protein (.1) AT5G45670 60 / 2e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 59 / 4e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G55050 59 / 4e-10 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 58 / 1e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 57 / 2e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 56 / 4e-09 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71691 53 / 3e-08 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011312 [exp] 371 / 1e-131 AT1G29670 88 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 261 / 8e-87 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 234 / 4e-76 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017903 [exp] 179 / 2e-56 AT4G28780 85 / 3e-19 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026646 [exp] 170 / 6e-51 AT1G29670 72 / 1e-13 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023578 [exp] 139 / 7e-42 AT4G28780 84 / 7e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026644 [exp] 122 / 5e-33 AT4G28780 113 / 2e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037112 [exp] 96 / 5e-23 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10030409 [exp] 84 / 9e-19 AT5G55050 157 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 67 / 1e-12 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 65 / 5e-12 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G104900 [exp] 64 / 6e-12 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 63 / 2e-11 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 62 / 3e-11 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 55 / 9e-09 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 54 / 2e-08 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 54 / 2e-08 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G115900 [exp] 52 / 8e-08 AT1G29670 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 52 / 9e-08 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012135 pacid=23154909 polypeptide=Lus10012135 locus=Lus10012135.g ID=Lus10012135.BGIv1.0 annot-version=v1.0 ATGAAGATGGGTAGAAACTTTAGTCCGCCGGCCTACCTCTCCTTCGTTGCGGCCAACTCGGGCGCCATGTCCGAATTAGACCTCCAGACTCTGCTAACTA ATGGGGGCTCAACTTTGCTTCCGGAGGCGGTGGGATTTCCGACTATGGCCGATGGGATTATGGTCAGGAACGCAGATCAGCCAATGGCAACAGACCTACA AACTGTGTTCAACTCAACTTCCGCAGCTGCTTACCTGAGCCGGCGTGTATATTACATAAACTTCGGAAGCGGAAGCATCCTAAACCAGCTGGACAGTCTC ATTTTCACCGACCCATCCTGCATCGGAAGGGCTTCAGCTGAATGTGCTCTATATGCAATTGGAGCACGCAAGTTCGGGGTCATAGAACCTCAACAAATCG GGTGCAGTCCATTTGGTCGAGCCACGAGCCCAACTGGCGCCTGCAACGCCAAAGCAAATTCGATTGCGGCGGCTATCCCTTCTCGCCTGGCTATAGCTTT GAGCATGCTTAGGGATGCGAATCCTGATATCGTTTATTCCATTGCAAATACTTATAATTTAAACGCCGACATCAACAACAGTCCTACACTATACGGTATA AGGAATGTTACGGCTTCATGCTGCAAGAACATATCGGGGTTTCTATGTGCCCCAAATTCTACTATATGCGGAGATCGCGATGGGCATTTGTATTGGGGTC TGTTTCCATGA
AA sequence Show only first row Show all	>Lus10012135 pacid=23154909 polypeptide=Lus10012135 locus=Lus10012135.g ID=Lus10012135.BGIv1.0 annot-version=v1.0 MKMGRNFSPPAYLSFVAANSGAMSELDLQTLLTNGGSTLLPEAVGFPTMADGIMVRNADQPMATDLQTVFNSTSAAAYLSRRVYYINFGSGSILNQLDSL IFTDPSCIGRASAECALYAIGARKFGVIEPQQIGCSPFGRATSPTGACNAKANSIAAAIPSRLAIALSMLRDANPDIVYSIANTYNLNADINNSPTLYGI RNVTASCCKNISGFLCAPNSTICGDRDGHLYWGLFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012135 [exp]	0	1

Compare expression of checked genes

Lus10012135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.