Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32080 620 / 0 AtLrgB membrane protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010412 [exp] 910 / 0 AT1G32080 700 / 0.0 membrane protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099600 [exp] 603 / 0 AT1G32080 663 / 0.0 membrane protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04172 [flax] [poplar] LrgB LrgB-like family
Representative CDS sequence Show only first row Show all	>Lus10012137 pacid=23154919 polypeptide=Lus10012137 locus=Lus10012137.g ID=Lus10012137.BGIv1.0 annot-version=v1.0 ATGGCGACAAATCATCACCACCCTCTGTCCGTCACTTCTTCGCCTACGTATCACCAACGACGCTCACCCCTTTTCATTACACGAACCTCGTTCAAAACCC CATCAACCAAAATCGCCGCCTTTTCTCACGTTACAGTCAAATCCTCTCACAGCCATTTCCGCAAACACCTGGTGCCCATCAACCCTAATCCTAGGTTCCT GCAAATGACCACTCAGGACGAGGAGACTCCGTCCGTTCTCCGCACGCCTTTGATCCAGTCGCTCGGGTCTGCTTCTGATGGCACTCCAGCTGCCTCGCCT ACTCTCACTAAGCACGTTGTGGGGGTTCTGCATTTGCTGGTTTCACTAGGGATTGTGCTGGCACTGGATAAATATCTGAAGATGGCGTTTGTGGCAGCTT CTATCAAGTTCCCAAGTGCATTGTTTGGGATGTTCTGTATATTCTCCGTGCTTGTGGTTCTTGACGTTGTTGTGCCTGCTGCAGCCGCCGGTGTTGTGAG CTTCTTCGAGCCTGCATTTCTGTTCATCCAGAGATGGCTTCCACTGTTCTATGTCCCCTCTCTGGTTGTCTTGCCACTCTCTGTTAAGGACATTCCTGCT GCTTCTGGTGCAAAGATTTGCGTCATTGTAGCTATTGGATGGTTGGCTTCTCTCTGTGTGGCGGGATTCACTGCGATTGCTGTGAGAAAAATGGTGAAGA CAGAAATGACAGATGCCGAGCCTATGGCAAAGCCCTCTGCTTTTTCCTCAATTGAGCTGTGGGCTTGGACTGGAATCTTTGTAGCATCATTCGCGGGTGC CTATTTCTATCCGTTTTTGCTGGAGACCAGTGCCCGGACTTGCCTTCCGTTCCTACTATCAGCCACCGTCCTAGGATACATTGTTGGTACTGGGTTGCCT TCTGGTTTGAAGAAAGTTTTCCATCCTATCATCTGCTGTGCTCTATCCGCAGATTTGGCAGCTTTCGCTTATGGTTATGTATCCAAAACCGGACTTGATG CTGTTTTAGGATCGTATCTTACGAAGGCTGCTGCTAATCCTGGAGCTGGAGATGTGTTAATGGGATTTCTAGGATCTGTGATTCTTTCTTTTGCCTTCTC AATGTTCAAGCAGAGGAAGCTCGTCAAGAGACACGCAGCAGAGATCTTCACCTCAGTCATCATCGCAACGTTTTTCTCGTTGTACTCGACGGCTTTTGCT GGACGTCTACTCCAACTGGAACCGAGCTTGACCATTTCCATTCTTCCTAGATGTATCACTGTGGCATTGGCCCTCAGCATAGTTTCACTGTTTGATGGTG CCAATTCATCGCTAACAGCAGCAGTGGTCGTAGTAACCGGTCTTATTGGAGCAAACTTCGTGCAAGCGACGCTCGATAAGTTGCAGTTCCGCGATCCTAT AGCTCGAGGAATCGCTACTGCTTCTAGTGCTCATGGACTGGGAACAGCAGCATTGTCAGCTAAGGAACCTGAGGCGCTTCCTTTCTGTGCGATTGCTTAT GCTCTTACAGGGATCTTCGGTTCGATAATTTGCTCGGTTCCGGTGGTTAGGCAAAGCTTGCTTGCTATAGTTGGCTGA
AA sequence Show only first row Show all	>Lus10012137 pacid=23154919 polypeptide=Lus10012137 locus=Lus10012137.g ID=Lus10012137.BGIv1.0 annot-version=v1.0 MATNHHHPLSVTSSPTYHQRRSPLFITRTSFKTPSTKIAAFSHVTVKSSHSHFRKHLVPINPNPRFLQMTTQDEETPSVLRTPLIQSLGSASDGTPAASP TLTKHVVGVLHLLVSLGIVLALDKYLKMAFVAASIKFPSALFGMFCIFSVLVVLDVVVPAAAAGVVSFFEPAFLFIQRWLPLFYVPSLVVLPLSVKDIPA ASGAKICVIVAIGWLASLCVAGFTAIAVRKMVKTEMTDAEPMAKPSAFSSIELWAWTGIFVASFAGAYFYPFLLETSARTCLPFLLSATVLGYIVGTGLP SGLKKVFHPIICCALSADLAAFAYGYVSKTGLDAVLGSYLTKAAANPGAGDVLMGFLGSVILSFAFSMFKQRKLVKRHAAEIFTSVIIATFFSLYSTAFA GRLLQLEPSLTISILPRCITVALALSIVSLFDGANSSLTAAVVVVTGLIGANFVQATLDKLQFRDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAY ALTGIFGSIICSVPVVRQSLLAIVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10012137 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	2.0	0.9428
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	2.4	0.9353
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10019083 [exp]	3.2	0.9223
AT4G05090			Inositol monophosphatase famil...		Lus10007817 [exp]	3.7	0.9202
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031299 [exp]	4.9	0.9190
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	5.5	0.9220
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	6.0	0.9338
AT5G08650			Small GTP-binding protein (.1)		Lus10025694 [exp]	7.7	0.9129
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	8.1	0.9011
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	8.5	0.9223

Compare expression of checked genes

Lus10012137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.