Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010411 [exp] 855 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133700 [exp] 395 / 4e-132 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012138 pacid=23154922 polypeptide=Lus10012138 locus=Lus10012138.g ID=Lus10012138.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGGAGTAGTCATGAGATCGAGAGCAATGGAGGGTCGATCTCGTTCACTAGCGCCGACGGGAACAGAGACCACCTCAGGACGGCCACGGCGG CGCAACCGGCGGATGTTCATGATACGGCGTCCAAGCTTCAGAGGGCGATGGAGGAGTACGCCGGCGGCGGCGAAGTGGTGGAGAAGCCGTCGAGCGTGGA AGTGTGGATTTGGTACTTTTACGAGCTTTGTTCCTACTTCATCCATTCGGCTCTGCTTCCCATTGTGTTCCCGTTGATGATCAGCCAGATCCACGGGCCG CCGGCGGAGCCTGACGGCGGGTGGACTGTTAGCCGGCGGAATATCACTTGCCGCCCCGACGAGTTGAAATTGTATGAAGCTTTAGTGTACAGGTCAATAG ACTTTGGGACCTCCAAAATCTCAGCCTTACAATGGACATCATTCTCATGGGGATTGGGCCTGGGCATAGCAGGCCCAATACTCTGGCTCATCTCCGCCAG CCTGGACCATGGAAGCCTGCAGACACTCATCGCCGGAACCGCCATCGCTACCGGATTCTTCTTCTGCCTCCCCACTGGATTCTTCAACGTCACATGGATC TTCCCTCCGTTCATCATCGCCATCGTTGCTGCCAGCACAATCGCTGCCGTTACCCATACCCGCCAGCACGCGTTGATGGTCCGAGGCTTCGCTGGCCCCA ACCTCAACAAACCGAGATTCGCCCTTCGGCGTTGGATCTCCGGCTGGCTCTCCCTCTACGCCGCCGCCGCAGGCGGCCTCGGATCCGCCGTCATGATCGC ATTCACCTACTACATGCTTCGAAACTCTGAGAAGGTCCTCAGTCTCTGGATCGTCACCATCTTCAGCGGATTGAAATGGGCCACCGGGATCTCACACGTG TTCTTCATCAAGACCGGCACAATCGACGGCGGATCCTTCCCTCCGCCGTCGAACACAGCTCACGCGCTCTCAATTTTCACGTTCCCGCACGCGCTCGGAA CTTTAATTTTGACTTTCCTCTCGTCTTTCACCACGATGTGCATCTTCGCGAGCGCGTTCCTCTACTTCGCCGGATACATCTGCCTCAATCCGCCGACGAT TCTCTACTCCTGGCTAGTCTATTTCATCTTCCCTCTGATTTCTCTCCCGGCGATCCACTTAGTCCAGTATATAATCCGCGCCGATTCGGCGAAGATGCAC ATGCTAGGGTTCATCCTATCGCTGATGACTTCCGGGTTCGGGTTCTACTTCATCGTATCACTGATGACTTCCTGGTTCGGGTTCTACTACCGGGCCGGGA TCTGGCAGAAGGGGGTCGTCCTCGCCTTCGCGGCGGTCCAGGGAACGTCGGCGGGGCTGCTCCACGCCTTCCAGCGGGTACTGCTGACGGACTGCTCGCC GCCGGGGAAGGAGGGCGTATTCGCGGCGTGGTTCGAGTGGTGCAGCACGGCGGGTACTTTCGCCGGTTTCACGGTGGCGGCGGCACTTCCGGGGGAGATC AGCACGAGCTTGGCCGTCACTTTCTTGATGTCGGGGGCGGGGGTGGGGGTGGGGGTGTTGGGGCACAAGACGGAGTCCGGGGGGGATTAG
AA sequence Show only first row Show all	>Lus10012138 pacid=23154922 polypeptide=Lus10012138 locus=Lus10012138.g ID=Lus10012138.BGIv1.0 annot-version=v1.0 MAEGSSHEIESNGGSISFTSADGNRDHLRTATAAQPADVHDTASKLQRAMEEYAGGGEVVEKPSSVEVWIWYFYELCSYFIHSALLPIVFPLMISQIHGP PAEPDGGWTVSRRNITCRPDELKLYEALVYRSIDFGTSKISALQWTSFSWGLGLGIAGPILWLISASLDHGSLQTLIAGTAIATGFFFCLPTGFFNVTWI FPPFIIAIVAASTIAAVTHTRQHALMVRGFAGPNLNKPRFALRRWISGWLSLYAAAAGGLGSAVMIAFTYYMLRNSEKVLSLWIVTIFSGLKWATGISHV FFIKTGTIDGGSFPPPSNTAHALSIFTFPHALGTLILTFLSSFTTMCIFASAFLYFAGYICLNPPTILYSWLVYFIFPLISLPAIHLVQYIIRADSAKMH MLGFILSLMTSGFGFYFIVSLMTSWFGFYYRAGIWQKGVVLAFAAVQGTSAGLLHAFQRVLLTDCSPPGKEGVFAAWFEWCSTAGTFAGFTVAAALPGEI STSLAVTFLMSGAGVGVGVLGHKTESGGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012138 [exp]	0	1
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	7.1	0.7331
AT1G08390			unknown protein		Lus10042503 [exp]	16.6	0.7099
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	19.3	0.7185
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	19.4	0.6940
					Lus10010411 [exp]	24.6	0.6157
AT4G29400			Protein of unknown function (D...		Lus10012917 [exp]	27.9	0.6711
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	33.4	0.6708
					Lus10038255 [exp]	43.5	0.6691
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	43.6	0.6878
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	43.7	0.6779

Compare expression of checked genes

Lus10012138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.