Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59900 976 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 369 / 2e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 320 / 2e-96 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 310 / 1e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 310 / 5e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 310 / 5e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14770 309 / 7e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06920 303 / 2e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 298 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 295 / 2e-88 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010410 [exp] 1733 / 0 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 1724 / 0 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 354 / 2e-108 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 348 / 3e-106 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 340 / 4e-102 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 336 / 4e-100 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10008185 [exp] 330 / 3e-98 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 329 / 3e-98 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 312 / 3e-93 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236800 [exp] 1162 / 0 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 354 / 5e-106 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 354 / 5e-106 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 350 / 4e-105 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 345 / 5e-105 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G040200 [exp] 343 / 2e-103 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 333 / 9e-102 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 330 / 1e-99 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 328 / 1e-99 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 323 / 3e-98 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012139 pacid=23154976 polypeptide=Lus10012139 locus=Lus10012139.g ID=Lus10012139.BGIv1.0 annot-version=v1.0 ATGAACCTATGCCGCCTCCGACAAATACCCATATCGAGTTATCATCCCATTTTAATGATCTCGCCTCCAAACTTCTTCTGCACAACTGCCGCCAACCTCC CCGATAGAGATGATGCCGAATTCGTCGCCGTCCTCGAGACGATCGTCCGAGGGAAGAATCAGAGCTGGAGAGCAGCTTTCAGCAACCCCTCGATCTCCGA AACGCTGACACCCTGGCACGTGGAGCAGGTGCTAATCCGGACGCTTGACGATTCCAGGTTAGCATTGAAGTTCTTCAACTTCCTAGGCCTTCACAGGAGC TTCGACCATTCGGTACTGTCTTTCTGCATTCTGATTCACTCTTTGGTGAATTCCGGCCATCACTGGCCGGCTTCTTCGCTGCTTCAAACGTTGTTGATAC GTGGGTTGGAGCCAAGGCATGTTTTTGAGGCGTTGCTGGAGTCTTCTCGGATGTGTAGAGTTAAGCCTGGTTTGGGGTTGGGGTCAGGGTTAGGGTTTGA TCTGTTGATTCAGAGCTATGTGGGGAATAAAAGAGTTTTTGATGGTGGGTTGGTTTTCAGGTGGATGAAAGGTTGTGGCTTTTGGCCCGAGGTTAGGACT TTAGGGGTGCTTGTTAATGGTTACTTGAAGGCTAGGCGGTTCGACACGGTTTTGAGTTTGTATGATGAGATTGTGAATGCAGGGGTAATGCCTGATGTTT ACATTGGGATAGCAGTGGTTAGAAGCTGGTGTGAGTTGAAGGAGTTTGACAGGGCGAAAGAAATGATTCGCTGGATGGAAGAGAATAGGTCCGAGTCGAG TTTAGTGTGTTACAATGTGCTTATTCACGGGCTCTGCAAATCCCAGAGAGTTTGGGAAGCTGTTGAGATCAAGGATGGTTTGATTCGTAAGGGTGTTCGA GCTGATGTTGTTACGTATTGTACTTTGGTGCTTGGGTTGTGTAGAGTGCAGGGGTTTGAGGTTGGTATGGAGATGATGTATGAGATGATTGAGTTAGGGT TTGTTCCTAGTGAAGCTGCCGTTTCGAGCCTAGTTGAGGGTTTGAGGAAGGCAGGGAAGATCGAGAATGCGTATGATTTGGTGATTAGGGTTGGGCGAGT AGGGGTAGTTCCTAGTTTGTTCGTGTACAATGCATTGATGAATTCGTTGTGTAAAAATGGAAGATTTGACGAGGCCAAGTCTCTTTTCGAAACTATGAAG GGGACGGGTTTATGTCCGAATGATATAACTTATTCTATTTTGGTTGATTCATGTTGTAGAAGGGGAGAACTAGATTCTGCAATTCAGTTTCTTCACAGAA TGATTGAGGCAAGGGTAAAACCAACCGTGTATCCATATAATTCGTTGATCCACAGTCACTGCAAAATAGGGAATTTGAATGCCGCATGGTCTTTCTTCCA TGAAATGATCGATAAAGGATTGACACCTACTGTTGTAACCTACACTTTGTTGATAAACGGGCTGTGCAACAATGGAGATGTGAACAAGGCATTTCAGCTT TATCATGAGATGACCGGTAAGGGTAATGCTCCTAATATCTACACATTTACTTCACTTATACACGGTTTCTGTCAAGCTAATATGATACAGGAAGCCATCC AATTGTTCAACGATATGGAAAAGTGGGATGTTACACCGAATGAGGTTACTTACAACGTCCTGATTGAAAAACACTGCAAGGATGGAAACACATCCGGAGC ATTCTCTTTGTTTGACGAAATGCAAGATAAGGGTCTAGTTCCAGATACGTATACGTACAGGCCTCTAATTAGCGGCCTTTGTTCTACCGGTAGAGTGTCG GAGGCCAAGGAGTTTGTGGACAGACTTCATTTTCAGCATTGTAGGTTAAACGAGCTATGCTACAGTGCACTGCTGCAAGGGTTTTGTGAGGAAGGAAGGC TCGGTGATGCACTAATTGCTGCTCGTGAAATGCTAGATAGAGGCATCAACATGGATCTCGTGTGTTACGGTGTTCTGGTAGATGGAACGATGAGGAAGCA TGATACGAAAGCGTTGATGGAGCTTTTAAAGGACATGCGTAAGCAAGGCTTGAGGCCTGACAATGTAATGTACACTAGCATGATCGATGGCCACGGGAAG ATAGGGAATGTTAAAGAGGCTTTAGGGATTTGGAATCTAATGATTGATGAAGGTTGCATACCGAGTACAGTAACGTACACCGCTCTTATAAACGGTCTGT GCAAGGCAGGATTGATGGAAAAGGCTGAGCTTCTCTGCAAGGAAATGCTCACTAAAGGTTCGCCTCCAAACCACGTTACATATAGCTGCTTTCTCGACCA TCTAGCCAAGGAAGGGAACATGGAGAAAGCCATGCAGCTACACAATGTCATGATGAACGGGTTTCTAGCGAACACCATTTCATGTAACATACTAATCAGG GGCTTCTGTAGATTAGGTAACATGGAGGAGGCTATGAGACTTCTGGATGGAATGAGTGATACCGGTATTTCGCCCGACTGTGTTACGTACTCGACGATAA TATATGAGTACTGCAGAAGGGGAAGTTTGCGGGAAGCTTTAGATTTATGGGGTAGTATGTTGAGTAAGGGCGTAAAGCCCGATACTTTAGCCTACAATTT TCTGATATATGGCTGCTGTATTGTCGGGGAAGTGGGAAAAGCGTTGGAATTGCGAGATGATATGTTGAAGAGGGGGGTGAAGCTGAAGTTTAGCACTCAT TGTGCTCTGAATCATGCAGCGGCTTGTTTGTCTGGGTAA
AA sequence Show only first row Show all	>Lus10012139 pacid=23154976 polypeptide=Lus10012139 locus=Lus10012139.g ID=Lus10012139.BGIv1.0 annot-version=v1.0 MNLCRLRQIPISSYHPILMISPPNFFCTTAANLPDRDDAEFVAVLETIVRGKNQSWRAAFSNPSISETLTPWHVEQVLIRTLDDSRLALKFFNFLGLHRS FDHSVLSFCILIHSLVNSGHHWPASSLLQTLLIRGLEPRHVFEALLESSRMCRVKPGLGLGSGLGFDLLIQSYVGNKRVFDGGLVFRWMKGCGFWPEVRT LGVLVNGYLKARRFDTVLSLYDEIVNAGVMPDVYIGIAVVRSWCELKEFDRAKEMIRWMEENRSESSLVCYNVLIHGLCKSQRVWEAVEIKDGLIRKGVR ADVVTYCTLVLGLCRVQGFEVGMEMMYEMIELGFVPSEAAVSSLVEGLRKAGKIENAYDLVIRVGRVGVVPSLFVYNALMNSLCKNGRFDEAKSLFETMK GTGLCPNDITYSILVDSCCRRGELDSAIQFLHRMIEARVKPTVYPYNSLIHSHCKIGNLNAAWSFFHEMIDKGLTPTVVTYTLLINGLCNNGDVNKAFQL YHEMTGKGNAPNIYTFTSLIHGFCQANMIQEAIQLFNDMEKWDVTPNEVTYNVLIEKHCKDGNTSGAFSLFDEMQDKGLVPDTYTYRPLISGLCSTGRVS EAKEFVDRLHFQHCRLNELCYSALLQGFCEEGRLGDALIAAREMLDRGINMDLVCYGVLVDGTMRKHDTKALMELLKDMRKQGLRPDNVMYTSMIDGHGK IGNVKEALGIWNLMIDEGCIPSTVTYTALINGLCKAGLMEKAELLCKEMLTKGSPPNHVTYSCFLDHLAKEGNMEKAMQLHNVMMNGFLANTISCNILIR GFCRLGNMEEAMRLLDGMSDTGISPDCVTYSTIIYEYCRRGSLREALDLWGSMLSKGVKPDTLAYNFLIYGCCIVGEVGKALELRDDMLKRGVKLKFSTH CALNHAAACLSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10012139 [exp]	0	1
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Lus10002094 [exp]	7.3	0.6520
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	7.8	0.6873
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	10.1	0.6659
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	12.0	0.6769
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	13.6	0.6869
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	14.3	0.6799
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	18.8	0.6636
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	20.3	0.6652
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	23.4	0.6835
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	29.9	0.6308

Compare expression of checked genes

Lus10012139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.