Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45590 127 / 2e-37 Ribosomal protein L35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010406 [exp] 234 / 1e-79 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1) Lus10010409 [exp] 234 / 1e-79 AT5G45590 147 / 1e-45 Ribosomal protein L35 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G099900 [exp] 128 / 4e-38 AT5G45590 134 / 2e-40 Ribosomal protein L35 (.1) Potri.001G133600 [exp] 122 / 8e-36 AT5G45590 105 / 3e-29 Ribosomal protein L35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01632 [flax] [poplar] Ribosomal_L35p Ribosomal protein L35
Representative CDS sequence Show only first row Show all	>Lus10012140 pacid=23154965 polypeptide=Lus10012140 locus=Lus10012140.g ID=Lus10012140.BGIv1.0 annot-version=v1.0 ATGCTGAGATTCTGCACAAAGCTCCGCTCTATAGCGGCGCAATCGTCGGCGGCGTCACAATCTCCGATCTTCCTGCAATCTTCCCGTATCCTTATTAATC ATTCTTCTCCGCAAATCCCTTCCAAATGCCGATCTCTCCACTCCGGAGCTGCTTCCACTGCTTGGAGTCTTAGCGGGCAGCTTATCAATGCGCCCAAGTT ACCGTCTCCATTGGGTTCCTCGCCATCGCCCTTCTTTTTGGTGAGTGTCCGCTGTGTTTCGTCGAGGGAGCGGAAGAGGAGGAGGAAGCCGATGACGCCA GTTACCTCCAAAGTGAAGAAGATTAAAATGAAGGGTTACTCTTCATACAAGGGCAGGTTTCGGCCATTGAAAGATGGGACTATTCGTCGTTGGCATGAGG GTAAGAGACACAATGCACACTTGAAGTCGAGTAAAGCAAAGCGCAGACTTCGACAGCCTGCTCTCGTCCATCCAGCATATGCCACGGTCATGAAGAAGCT CAACTTCTTCAACTAA
AA sequence Show only first row Show all	>Lus10012140 pacid=23154965 polypeptide=Lus10012140 locus=Lus10012140.g ID=Lus10012140.BGIv1.0 annot-version=v1.0 MLRFCTKLRSIAAQSSAASQSPIFLQSSRILINHSSPQIPSKCRSLHSGAASTAWSLSGQLINAPKLPSPLGSSPSPFFLVSVRCVSSRERKRRRKPMTP VTSKVKKIKMKGYSSYKGRFRPLKDGTIRRWHEGKRHNAHLKSSKAKRRLRQPALVHPAYATVMKKLNFFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	2.6	0.9503
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	3.3	0.9340
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	4.6	0.9436
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	5.2	0.9362
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	7.5	0.9367
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	7.7	0.9352
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	8.7	0.9471
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10000148 [exp]	10.1	0.9283
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	10.2	0.9387
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	11.1	0.9432

Compare expression of checked genes

Lus10012140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.