Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10760 586 / 0 MTA, EMB1706 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) AT4G09980 122 / 2e-28 EMB1691 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) AT1G19340 51 / 2e-06 Methyltransferase MT-A70 family protein (.1) AT1G37010 39 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010405 [exp] 1219 / 0 AT4G10760 818 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10010408 [exp] 576 / 0 AT4G10760 447 / 2e-154 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Lus10014971 [exp] 138 / 3e-33 AT4G09980 927 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Lus10038853 [exp] 137 / 4e-33 AT4G09980 929 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G085200 [exp] 919 / 0 AT4G10760 627 / 0.0 EMBRYO DEFECTIVE 1706, mRNAadenosine methylase (.1) Potri.012G144400 [exp] 138 / 2e-33 AT4G09980 874 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2) Potri.015G147200 [exp] 138 / 2e-33 AT4G09980 899 / 0.0 EMBRYO DEFECTIVE 1691, Methyltransferase MT-A70 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05063 [flax] [poplar] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Lus10012141 pacid=23154968 polypeptide=Lus10012141 locus=Lus10012141.g ID=Lus10012141.BGIv1.0 annot-version=v1.0 ATGGAGCCCCAATCCGACGGCAACGAAGCCAACAACGCAGAACCAACTTCATCATCATCCACAATCAAAGCACTAACAACCGAGCTCGAATCCCGCATCC AAACCCAACGCTCCACGCAGCTAAACCTCTTATCCTCCCTCCAAACCCTAGTCCCCAACATCGTCTCCTCTCTCGACCTCTCCCTCCAAATCGTATCATC CTTCAATGGAAAATCCTTCACTCCGACTCCACCGCTCCCCAACGGCAACAAAGCCCCAGTCGAAATCAAGCACGGAGGAGGAGGAGGAGGCCAACACAGC AAGCCTTCCATATCCAAGATTCACAGCGCGGGAGTGCAAGAAGAAGCCGAGGACGAAGATGATGATAGGTTACGGGACGGGGAGAGTCCGCTCTCAGTGG TGAGAGTGATGGTGGCCGAGTGTCTGCTGCAGAGGATTCCCTTCGATCCGATCGACTCGTCGACCGTGCTGAGGAAGCTGGAGAACGACGAGAACGTCAC CACGGCGGAGAAGGCGGCGCTGAGGGAAGTCGGAGGGGAGTCCGGAGCCATCCTGGCGGTGGAGATGGCTCTGAGGTCGATGGCGGAGGAGAATCGAGGA GTTGAGCTGGAGGAGTTTGTGGTGAGTGGTAAGTCTAGGGTTATGGTTGTGAACATCGATAGGAATAGGCTTGTCAAGGAGCTGCCGGAGAGTGCTCAGC ACCAGCAGGAGATGGAGCTGATGAACTCTTCAGGGAGTGAATCGAGTCGAGTTACGAATTTCAGAGGAGGGAGAGGTGGAATGCAGATGGACATGTGGAT GAGAGGGCCAGGAGGAGGGATGATGATGGGTGGTACTGGGAGAGGGATGATGATGCCAGCTCAGAGGCCCCCATTGGGACCGAATTCGAAGCAGCAGAGG ACGGAGGAGGATGACTTAAATGACTTGGAAGCGTTGCTGAGCAAGAAGTCATTTCGAGAGATGCAGAAGTCGAAGACCGGGGAGGAGCTTCTGGATTTGA TTCATCGGCCTACTGCGAAGGAGACTGCTATGGCTGCTAAGTTCAAAACTAAAGGTGGATCTCAGCTGAAGGAGTACTGCTCGGCTTTGACGAAAGAGGA TTGCAGACGACAATCTGGTTCGTTCATGGCTTGTGAGAAGGTATGTTTGAAGAGCCGAGTTCTGGGATGCTATGCTTTCTCTTATGCATTTGCTGCTGTC CATTTCCGTAGAATCATTGCTCCTCATACGGACATTAGCCAAGGCGATTGCTCGTTTCTGGACACTTGCCGACACATGAAGGTTAGTTTTCCGGTCTACA TTGTAAGCATTAGCAATTGTGGTACTCTTGCGCCTCCCAGGCCTTTAAAGCCCCAGCGTGCTGAATACTGTTCAGAAGTTGAACTCGGGGAGCCCCAGTG GATCAACTGCGACATCCGGTCGTTTAAAATGGAGATTTTAGGTCAATTCGGAGTGATCATGGCTGATCCACCTTGGGATATCCATATGGAACTGCCCTAT GGAACGATGGCTGACGATGAAATGCGTAACCTTAATGTCCCTGTGCTGCAAACTGACGGCTTGATCTTCCTGTGGGTTACCGGACGTGCGATGGAGCTTG GACGTGAATGTTTAGATATGTGGGGTTACAAACGAGTCGAGGAGATTATATGGGTGAAGACTAACCAACTTCAGCGAATCATTCGGACAGGAAGGACAGG ACATTGGCTCAATCATAGCAAGGAGCATTGTCTTGTCGGAATCAAGGGGAATCCAGATGTTAACAGGAATATCGATACCGATGTTATCGTTGCTGAGGTT CGAGAAACAAGTCGTAAGCCTGATGAGATGTATCCTTTGCTGGAGAGGATAAGTCCAAGGACGAGGAAGCTCGAATTGTTTGCTCGAATGCACAATACTC AAGCAGGGTGGATGTCGATGGGGAATCAGCTGGATGGTGTACGACTGGTGGACGAAGGGCTTCGAGCTCGATTCAAGGCTGCTTACCCCGATGTGGTTGT GCAGCCAGCCTCCCCTCCTCGACCATCTGCGATGGAGATCGACTCTGCGCCTTTTGGAGACCACACAAACACAGCACCACAACCAGCATATGCATCTGAT GAGAAGCATATGACCGCTGGGAGTGCTATGGCTGCTGGCTGA
AA sequence Show only first row Show all	>Lus10012141 pacid=23154968 polypeptide=Lus10012141 locus=Lus10012141.g ID=Lus10012141.BGIv1.0 annot-version=v1.0 MEPQSDGNEANNAEPTSSSSTIKALTTELESRIQTQRSTQLNLLSSLQTLVPNIVSSLDLSLQIVSSFNGKSFTPTPPLPNGNKAPVEIKHGGGGGGQHS KPSISKIHSAGVQEEAEDEDDDRLRDGESPLSVVRVMVAECLLQRIPFDPIDSSTVLRKLENDENVTTAEKAALREVGGESGAILAVEMALRSMAEENRG VELEEFVVSGKSRVMVVNIDRNRLVKELPESAQHQQEMELMNSSGSESSRVTNFRGGRGGMQMDMWMRGPGGGMMMGGTGRGMMMPAQRPPLGPNSKQQR TEEDDLNDLEALLSKKSFREMQKSKTGEELLDLIHRPTAKETAMAAKFKTKGGSQLKEYCSALTKEDCRRQSGSFMACEKVCLKSRVLGCYAFSYAFAAV HFRRIIAPHTDISQGDCSFLDTCRHMKVSFPVYIVSISNCGTLAPPRPLKPQRAEYCSEVELGEPQWINCDIRSFKMEILGQFGVIMADPPWDIHMELPY GTMADDEMRNLNVPVLQTDGLIFLWVTGRAMELGRECLDMWGYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPDVNRNIDTDVIVAEV RETSRKPDEMYPLLERISPRTRKLELFARMHNTQAGWMSMGNQLDGVRLVDEGLRARFKAAYPDVVVQPASPPRPSAMEIDSAPFGDHTNTAPQPAYASD EKHMTAGSAMAAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10012141 [exp]	0	1
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	6.6	0.8312
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10039205 [exp]	10.5	0.7797
AT5G67630			P-loop containing nucleoside t...		Lus10011551 [exp]	10.9	0.8140
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	17.0	0.7796
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	18.7	0.7987
AT3G18035		HON4	winged-helix DNA-binding trans...		Lus10004328 [exp]	29.2	0.7997
AT5G07900			Mitochondrial transcription te...		Lus10004957 [exp]	29.2	0.7715
AT1G02870			unknown protein		Lus10001459 [exp]	30.2	0.7733
AT1G48620		HON5	high mobility group A5 (.1)		Lus10028911 [exp]	61.1	0.7774
AT1G02870			unknown protein		Lus10002436 [exp]	68.1	0.7445

Compare expression of checked genes

Lus10012141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.