Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 448 / 1e-159 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 428 / 9e-152 ATPRR2 pinoresinol reductase 2 (.1) AT1G75290 252 / 1e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 249 / 2e-81 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 241 / 4e-78 NmrA-like negative transcriptional regulator family protein (.1) AT1G75300 230 / 6e-74 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 229 / 1e-73 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 197 / 3e-61 NmrA-like negative transcriptional regulator family protein (.1) AT4G35250 54 / 8e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 42 / 0.0002 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010403 [exp] 629 / 0 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012145 [exp] 566 / 0 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10007599 [exp] 424 / 1e-145 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012147 [exp] 395 / 2e-138 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10040442 [exp] 259 / 3e-85 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 258 / 9e-85 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 256 / 5e-84 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 255 / 7e-82 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 244 / 1e-79 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100200 [exp] 495 / 2e-178 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 489 / 4e-176 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 430 / 1e-152 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.005G228700 [exp] 266 / 4e-88 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 261 / 5e-86 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 256 / 4e-84 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 245 / 5e-80 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 235 / 1e-75 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 227 / 1e-72 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 223 / 3e-71 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10012143 pacid=23154938 polypeptide=Lus10012143 locus=Lus10012143.g ID=Lus10012143.BGIv1.0 annot-version=v1.0 ATGAGGCAGTGCAGAGTGCTGGTGGTGGGAGGTACCGGGTACATAGGCAAGCGGATCGTCAAGGCTAGCCTCGAACATGGCCACGACACTTATGTTCTCA AGCGACCCGAGACTGGCCTCGACATCGAAAAGCTCCAGCTCTTGTTGTCTTTCAAGAAACAGGGCGCCCACCTTGTCGAGGCCTCCTTCTCTGACCACGA GAGCCTTGTTCGAGCGGTGAAGCTCGTTGATGTTGTGATATGTACCATGTCGGGGGTTCATTTCCGGTCGCATAACATCCTCCTCCAGCTCAAGCTCGTC GAGGCCATCAAGGAAGCCGGAAATGTTCAGAGATTCATTCCATCGGAGTTCGGGATGGACCCGGCTAGGATGGGGGATGCATTGGAGCCGGGGAGGGAGA CGTTTGATCAGAAGATGGTGGTGAGGAAAGCGATCGAGGACGCGAATATCCCCCACACGTACATCTCGGCCAACTGCTTTGCCGGTTACTTCGTCGGCAA TCTTTCACAGCTCGGAACCCTAAGCCCTCCTTCCGACAAGGTCATCATCTATGGGGATGGCAACGTCAAAGTGGTGTATGTGGACGAAGAGGATGTCGCC ACATACACAATCAAGACGATCGAGGATAACCGGACACTGAACAAGACGGTGTACCTCAGGCCACCAGAGAATGTGATGACTCAAAGACAATTGGTGGCTA CTTGGGAGAAGCTCTCAGGCAACCAACTTCAGAAGATTGAGTTTCCTTCAAAAGACTTTCTTGCACTTATGGAAGGGAGGGACGTGGCGGAGCAAGCCGG AATAGGGCACTTCTACCACATTTTCTACGAAGGATGCCTCACCAACTTCGACATCAACGCCGGTCAAGACCAAGTGGAAGCTTCGAGTTTGTACCCTGAA GTTGATTACACTCGTGTCGAGGATATGTTGAAGATCTACATTTGA
AA sequence Show only first row Show all	>Lus10012143 pacid=23154938 polypeptide=Lus10012143 locus=Lus10012143.g ID=Lus10012143.BGIv1.0 annot-version=v1.0 MRQCRVLVVGGTGYIGKRIVKASLEHGHDTYVLKRPETGLDIEKLQLLLSFKKQGAHLVEASFSDHESLVRAVKLVDVVICTMSGVHFRSHNILLQLKLV EAIKEAGNVQRFIPSEFGMDPARMGDALEPGRETFDQKMVVRKAIEDANIPHTYISANCFAGYFVGNLSQLGTLSPPSDKVIIYGDGNVKVVYVDEEDVA TYTIKTIEDNRTLNKTVYLRPPENVMTQRQLVATWEKLSGNQLQKIEFPSKDFLALMEGRDVAEQAGIGHFYHIFYEGCLTNFDINAGQDQVEASSLYPE VDYTRVEDMLKIYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	0	1
AT1G58070			unknown protein		Lus10015482 [exp]	1.0	0.9966
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	1.7	0.9917
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043156 [exp]	2.0	0.9922
AT5G26330			Cupredoxin superfamily protein...		Lus10021925 [exp]	3.5	0.9853
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	3.9	0.9830
AT1G05060			unknown protein		Lus10030021 [exp]	4.5	0.9795
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	4.7	0.9795
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	4.9	0.9801
AT1G02570			unknown protein		Lus10010004 [exp]	4.9	0.9791
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	5.3	0.9763

Compare expression of checked genes

Lus10012143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.