Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50400 831 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 795 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 790 / 0 Purple acid phosphatases superfamily protein (.1) AT1G13900 202 / 1e-56 Purple acid phosphatases superfamily protein (.1) AT2G03450 192 / 3e-53 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT4G13700 103 / 2e-23 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 100 / 3e-22 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT3G52780 100 / 3e-22 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52810 97 / 3e-21 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 95 / 2e-20 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036904 [exp] 834 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 831 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037080 [exp] 513 / 7e-177 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 436 / 2e-148 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 319 / 1e-100 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 303 / 2e-94 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 298 / 4e-93 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 279 / 3e-85 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 261 / 1e-75 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095900 [exp] 889 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 858 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 828 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 790 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 788 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 313 / 2e-98 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 310 / 4e-97 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 197 / 4e-55 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G176000 [exp] 100 / 5e-22 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G055900 [exp] 99 / 1e-21 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10012144 pacid=23155006 polypeptide=Lus10012144 locus=Lus10012144.g ID=Lus10012144.BGIv1.0 annot-version=v1.0 ATGGAATTGGCGGGTCTTCTTCTTCTGCTGCTGCCATTGTTGTTGTTGTTGTTGTTGAATGATGGTAGAGCTTCTGCAAGTATTAGCCAGCCCTTAACCC AGATAGGAATCCACAATGCTGTGTTTGCTCTTCAGGACACGGCTTCAATTAAGCCAGCCCCTGCACTTCTCGGAACCAACGGAGAAGACACTCAATGGGT GTATGTGGATTTTGGCGGCCACTCAGGAGATGATGCTTGGATTGCCGTCTTCTCTCCTTCCAATTTCAACTCGTCATCCTGTCCAGCAGGTGATGAAAGG AGAGTCCAGCCGCCATACATATGTTCTGCTCCCATTAAGTATAAATGGGCGAATGAGAGCACAGGAAACGGGTCTTTGAAGTTTCAACTCATCAACCAGC GCCAAGACTTCTCCTTTGCCCTCTTTACCGGTGGACTCTCAAATCCAAAACTGGTGGCAATGTCACAACCCATTAGCTTCGCCAACCCAAAGGCGCCCCT TTATCCTCGTCTTGCTCTGGGAAAATCTTGGAATGAAATGACTGTGACATGGACGAGCGGCTACAACATTGATGAAGCTGTTCCTTTTGTTCAATGGGGT CTCAAAGGGGAAGCACATACTCAATCACCCGCTGGAACACTCACTTTTACTAGAAACAGCATGTGTGGTCCACCTGCTAGAACAGTTGGCTGGCGTGATC CTGGTTTCTTCCACACCACTTTCATGAAAGATCTCTGGCCAAACTCCGTGTACACATACCAGCTAGGGCATAAGCTGCATAATGGCTCCATTATCTGGAG CAAGATCCATTCTTTCAAATCGTCTCCTTATCCGGGACAGGATTCGTTGCAACGCGTAATAATTTTCGGTGATATGGGGAAGGCTGAACGTGACGGTTCG AATGAATACAGCAATTACCAGCCAGGGTCACTCAACACAACAGATACACTCATCAATGACTTGGACAACTATGACATAGTTTTCCATATAGGAGATCTTT CATATGCCAATGGATACATCTCTCAATGGGATCAATTCACACAAATGGTCGAGCCTATAGCTTCAACCGTGCCTTACATGGTCGCAAGTGGGAATCATGA ACGTGACTACCCTGGTTCGGGATCCTTTTACGACACGAATGATTCAGGCGGTGAATGTGGAGTGGTGGCCGAGACAATGTTCTACGTTCCAGCAGATAAC AGAGCTAAGTTTTGGTACGAAACAGATTACGGAATGTTCCATTTCTGCATAGCAGACACGGAACACGACTGGAGACAAGGCTCCGAACAATACAAACACA TCGAAAAGTGCCTAGCATCGGCCGACAGACAAAAGCAGCCATGGCTGATCTTCATAGCACACCGAGTCCTCGGCTACTCTTCCAGCACTTTCTACGCATC GCAAGGCTCGTTCGATGAGCCAATGGGAAGAGACGACATGCAGAAGCTATGGCAGAAGTACAAAGTGGACATAGCCTTCTTCGGCCACGTCCATAACTAC GAGAGGAGCTGCCCCATATACCAGAACATATGCGTGAACAACGAGAAGACGCACTATTCTGGCACTGTCAACGGAACAATACATGTTGTGGTCGGAGGCG GAGGGAGCCATTTATCGGATTTCAGTCCGCTGCAGACGTACTGGAGCGTTTACAGGGATCGAGATTACGGATTTGTGAAGCTGACGGCTTATAATCACTC GTCGTTGTTGTTAGAGTATAAGAGGAGTAGCGATGGAAAGGTTTATGATTGGTTCACGATTGAAAGGGAGTATAGGGATGTTCTTGCTTGTGTTCATGAT GGTTGCGAACCAACTACGCTTGCTATGTGA
AA sequence Show only first row Show all	>Lus10012144 pacid=23155006 polypeptide=Lus10012144 locus=Lus10012144.g ID=Lus10012144.BGIv1.0 annot-version=v1.0 MELAGLLLLLLPLLLLLLLNDGRASASISQPLTQIGIHNAVFALQDTASIKPAPALLGTNGEDTQWVYVDFGGHSGDDAWIAVFSPSNFNSSSCPAGDER RVQPPYICSAPIKYKWANESTGNGSLKFQLINQRQDFSFALFTGGLSNPKLVAMSQPISFANPKAPLYPRLALGKSWNEMTVTWTSGYNIDEAVPFVQWG LKGEAHTQSPAGTLTFTRNSMCGPPARTVGWRDPGFFHTTFMKDLWPNSVYTYQLGHKLHNGSIIWSKIHSFKSSPYPGQDSLQRVIIFGDMGKAERDGS NEYSNYQPGSLNTTDTLINDLDNYDIVFHIGDLSYANGYISQWDQFTQMVEPIASTVPYMVASGNHERDYPGSGSFYDTNDSGGECGVVAETMFYVPADN RAKFWYETDYGMFHFCIADTEHDWRQGSEQYKHIEKCLASADRQKQPWLIFIAHRVLGYSSSTFYASQGSFDEPMGRDDMQKLWQKYKVDIAFFGHVHNY ERSCPIYQNICVNNEKTHYSGTVNGTIHVVVGGGGSHLSDFSPLQTYWSVYRDRDYGFVKLTAYNHSSLLLEYKRSSDGKVYDWFTIEREYRDVLACVHD GCEPTTLAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10012144 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	12.1	0.7974
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	15.9	0.8083
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	17.6	0.7405
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	22.2	0.7728
AT4G35840			RING/U-box superfamily protein...		Lus10028406 [exp]	39.0	0.7609
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	47.5	0.7322
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	53.9	0.7559
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	56.1	0.7268
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10040664 [exp]	56.4	0.7172
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	73.8	0.7257

Compare expression of checked genes

Lus10012144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.