Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 419 / 2e-148 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 399 / 2e-140 ATPRR2 pinoresinol reductase 2 (.1) AT1G75280 256 / 3e-84 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 254 / 1e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 234 / 2e-75 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 231 / 1e-74 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 231 / 2e-74 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 203 / 2e-63 NmrA-like negative transcriptional regulator family protein (.1) AT4G35250 58 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010403 [exp] 566 / 0 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012143 [exp] 565 / 0 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10007599 [exp] 399 / 4e-136 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10012147 [exp] 376 / 3e-131 AT1G32100 383 / 1e-133 pinoresinol reductase 1 (.1) Lus10026350 [exp] 265 / 9e-88 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 258 / 6e-85 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 255 / 1e-83 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 253 / 4e-83 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 255 / 9e-82 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133300 [exp] 462 / 2e-165 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 461 / 7e-165 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133200 [exp] 412 / 1e-145 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.005G228700 [exp] 267 / 2e-88 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 265 / 1e-87 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 263 / 6e-87 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 246 / 9e-80 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 242 / 1e-78 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 226 / 3e-72 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103701 [exp] 212 / 7e-67 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10012145 pacid=23154983 polypeptide=Lus10012145 locus=Lus10012145.g ID=Lus10012145.BGIv1.0 annot-version=v1.0 ATGGGGCGGTGCAGAGTTCTGGTGGTGGGAGGTACCGGGTACATAGGCAAGCGGATCGTCAAGGCTAGCATCGAACACGGCCACGACACTTACGTCCTCA AGCGACCTGAGACGGGGCTCGATATTGAAAAATTCCAGCTCTTGTTGTCTTTCAAGAAACAGGGCGCCCACCTCGTCGAGGCCTCCTTCTCTGACCACGA GAGCCTTGTTCGAGCGGTGAAGCTAGTCGATGTCGTGATATGTACCGTCTCGGGGGCTCATTCACGCAGCCTCCTCCTCCAGCTCAAGTTGGTCGAGGCC ATCAAAGAGGCCGGAAATGTTAAGAGATTCATTCCATCGGAGTTCGGGATGGACCCGGCGAGGATGGGGGATGCATTGGAGCCAGGGAGGGAGACGTTCG ATCTGAAGATGGTGGTGAGGAAAGCGATCGAGGACGCGAATATCCCCCACACTTACATCTCGGCCAACTGCTTTGGAGGTTATTTCGTCGGCAATCTTTC GCAACTCGGACCTCTAACCCCTCCTTCCGATAAGGTCACCATCTATGGAGATGGCAACGTCAAAGTGGTGTACATGGATGAAGATGATGTCGCTACTTAC ACGATCATGACGATAGAGGATGATCGGACACTTAACAAGACGATGTACCTCCGGCCACCGGAAAATGTGATTACTCATAGGCAATTAGTGGAGACTTGGG AAAAGCTCTCAGGCAACCAACTTCAAAAGACTGAGCTTTCTTCACAAGACTTTCTTGCACTCATGGAAGGGAAGGACGTAGCGGAGCAGGTCGTAATAGG GCACCTCTACCACATCTACTACGAAGGATGTCTCACCAACTTTGACATCGACGCTGCCCAAGATCAAGTAGAAGCTTCGAGTTTATACCCTGAAGTTGAA TACATTCGTATGAAAGATTATCTGATGATCTACCTTTAA
AA sequence Show only first row Show all	>Lus10012145 pacid=23154983 polypeptide=Lus10012145 locus=Lus10012145.g ID=Lus10012145.BGIv1.0 annot-version=v1.0 MGRCRVLVVGGTGYIGKRIVKASIEHGHDTYVLKRPETGLDIEKFQLLLSFKKQGAHLVEASFSDHESLVRAVKLVDVVICTVSGAHSRSLLLQLKLVEA IKEAGNVKRFIPSEFGMDPARMGDALEPGRETFDLKMVVRKAIEDANIPHTYISANCFGGYFVGNLSQLGPLTPPSDKVTIYGDGNVKVVYMDEDDVATY TIMTIEDDRTLNKTMYLRPPENVITHRQLVETWEKLSGNQLQKTELSSQDFLALMEGKDVAEQVVIGHLYHIYYEGCLTNFDIDAAQDQVEASSLYPEVE YIRMKDYLMIYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012145 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10028762 [exp]	7.8	0.8877
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	9.2	0.8641
AT1G65870			Disease resistance-responsive ...		Lus10030483 [exp]	11.2	0.8293
					Lus10023025 [exp]	12.2	0.7923
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10040858 [exp]	13.0	0.8399
					Lus10012065 [exp]	27.0	0.8376
AT4G03230			S-locus lectin protein kinase ...		Lus10039725 [exp]	42.5	0.7714
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	49.1	0.8352
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	52.9	0.7525
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10019808 [exp]	54.8	0.8320

Compare expression of checked genes

Lus10012145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.