Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32100 383 / 1e-133 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 373 / 6e-130 ATPRR2 pinoresinol reductase 2 (.1) AT1G75280 263 / 1e-86 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 258 / 7e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 238 / 6e-77 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 235 / 6e-76 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 235 / 1e-75 NmrA-like negative transcriptional regulator family protein (.1) AT4G34540 196 / 9e-61 NmrA-like negative transcriptional regulator family protein (.1) AT4G33360 42 / 0.0003 FLDH farnesol dehydrogenase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007599 [exp] 569 / 0 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1) Lus10010403 [exp] 397 / 2e-139 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10012143 [exp] 395 / 2e-138 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10012145 [exp] 376 / 4e-131 AT1G32100 419 / 2e-148 pinoresinol reductase 1 (.1) Lus10040442 [exp] 272 / 2e-90 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10042311 [exp] 265 / 3e-87 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 269 / 7e-87 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 259 / 5e-85 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 252 / 3e-82 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133200 [exp] 515 / 0 AT1G32100 410 / 6e-145 pinoresinol reductase 1 (.1) Potri.003G100200 [exp] 414 / 4e-146 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.001G133300 [exp] 410 / 1e-144 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1) Potri.009G118100 [exp] 265 / 2e-87 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 264 / 3e-87 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 262 / 3e-86 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.011G168400 [exp] 249 / 9e-81 AT4G39230 448 / 2e-159 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 236 / 3e-76 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118000 [exp] 227 / 9e-73 AT4G34540 432 / 7e-154 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103701 [exp] 205 / 5e-64 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10012147 pacid=23155005 polypeptide=Lus10012147 locus=Lus10012147.g ID=Lus10012147.BGIv1.0 annot-version=v1.0 ATGGGATCCCTCCGAGCCGTCACCACCGCCGACCACAGGAGCAAGGTCCTGGTGATCGGAGGCACAGGCTACTTAGGCAAGAGGCTAGTAACGGCCAGCT TAGCCGCCGGTCACGAAACCTACGTCCTCCAACGTCCGGAGATCAGCATCGACATCGAGAAGATCCAGCTCCTGCTGTCGTTTAAACAGGCCGGTGCACG TCTAGTCAGCGGCTCGTTCAACGACTACCGCAGCCTCGTAGACGCCATCAAGCTTGTAGACGTCGTGATCTGCGCCGTCTCCGGCGTCCACATCCGTAGC CACCAGATCTTGCTCCAGCTCAAGCTCGTTGATGCCATCAAAGAAGCCGGTAACGTTAAGAGGTTCTTGCCGTCGGAGTTTGGGACTGATCCGACAACGA TGGAGAACGCGATGGAACCGGGGAGAGTGACGTTCGACGACAAGATGGTGGTGAGGAAGGCGATAGAGAAAGCTGGGATTCCGTTCACCTACATCTCTGC CAATTGCTTCGCCGGTTACTTCCTCGGCGGCCTTTGCCAGCCTGGCTTTATTCTTCCTTCACGTGACCATGTGACTTTGCTCGGAGACGGTGACCAGAAA GCCCCGGATCCGTCATGGTCACGAGCGCCACCAGCTATTCATGTTGATGAAGATGATATTGCGCGTTACACGATCAAAACCATAGACGACCCTCATACTG TAAATAGGACCGTCTACATCAAGCCGCCCAAAAACGTGTTGTCCCAACGGGAAGTCGTCGGAATTTGGGAGAAATACATCGGTAAAGAACTCGAAAAAAC AACCCTATCCGCGGAAGAGTTCCTAGTGATGATGAAAGAGCAAGTTGGATTGACGCACTACTACCACGTGTACTACGAAGGGTGCCTTGCGAACTTCGAG ATCGGAGATGAAGCGCATGAGGCTACTAAGCTGTATCCGGAAGTTGGGTACACAACTGTTGCAGAGTATATGAAACGATACGTTTAG
AA sequence Show only first row Show all	>Lus10012147 pacid=23155005 polypeptide=Lus10012147 locus=Lus10012147.g ID=Lus10012147.BGIv1.0 annot-version=v1.0 MGSLRAVTTADHRSKVLVIGGTGYLGKRLVTASLAAGHETYVLQRPEISIDIEKIQLLLSFKQAGARLVSGSFNDYRSLVDAIKLVDVVICAVSGVHIRS HQILLQLKLVDAIKEAGNVKRFLPSEFGTDPTTMENAMEPGRVTFDDKMVVRKAIEKAGIPFTYISANCFAGYFLGGLCQPGFILPSRDHVTLLGDGDQK APDPSWSRAPPAIHVDEDDIARYTIKTIDDPHTVNRTVYIKPPKNVLSQREVVGIWEKYIGKELEKTTLSAEEFLVMMKEQVGLTHYYHVYYEGCLANFE IGDEAHEATKLYPEVGYTTVAEYMKRYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	8.9	0.7798
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	13.7	0.7815
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	14.6	0.8022
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	24.1	0.7544
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	24.7	0.7386
					Lus10006101 [exp]	28.4	0.6979
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	30.9	0.7709
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	33.0	0.7757
					Lus10022643 [exp]	35.5	0.7671
					Lus10021921 [exp]	46.2	0.7405

Compare expression of checked genes

Lus10012147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.