Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 158 / 2e-42 UDP-Glycosyltransferase superfamily protein (.1) AT3G53160 154 / 5e-41 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36770 149 / 3e-39 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 148 / 4e-39 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT1G73880 148 / 4e-39 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT2G36760 148 / 5e-39 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G15490 147 / 7e-39 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36800 147 / 8e-39 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G15480 147 / 1e-38 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34135 145 / 4e-38 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007597 [exp] 801 / 0 AT2G36780 168 / 4e-46 UDP-Glycosyltransferase superfamily protein (.1) Lus10014080 [exp] 147 / 9e-40 AT2G15480 330 / 3e-110 UDP-glucosyl transferase 73B5 (.1.2) Lus10019835 [exp] 150 / 1e-39 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10005951 [exp] 149 / 3e-39 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10019833 [exp] 145 / 3e-38 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10029453 [exp] 145 / 7e-38 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10014437 [exp] 144 / 4e-37 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10027739 [exp] 142 / 7e-37 AT2G36780 453 / 2e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10014086 [exp] 142 / 1e-36 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G133000 [exp] 323 / 9e-105 AT2G15490 164 / 6e-45 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.003G100500 [exp] 321 / 1e-103 AT2G36780 161 / 2e-43 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G133100 [exp] 229 / 1e-69 AT3G53160 159 / 2e-43 UDP-glucosyl transferase 73C7 (.1) Potri.001G016300 [exp] 159 / 7e-43 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 154 / 5e-41 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G123700 [exp] 154 / 7e-41 AT4G34131 446 / 3e-153 UDP-glucosyl transferase 73B3 (.1) Potri.012G048700 [exp] 153 / 9e-41 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.017G077500 [exp] 152 / 4e-40 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 150 / 1e-39 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 150 / 2e-39 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10012148 pacid=23154918 polypeptide=Lus10012148 locus=Lus10012148.g ID=Lus10012148.BGIv1.0 annot-version=v1.0 ATGGCGAACGTAAATTCCCCAATTAGCGCCGGAGAAGAAGAGATCTGGGTGATCACATTCCATGGACAAGGACACCTCCTCCCAACTTTCCAGCTCTGCA ACAAGTTCGTCTCTAGGAAACTAACAACTACTCTCTTCATTTCCGCCGCCGTCTCCTCCTCAGTCCCGCCCTCCCTCGCCGCCGGCGAACTCTTTACAGT CATAGAATACCCGCCCCTCCCGCCACCGCCCCCGATGGAGGAGGATCGTCACTCGGATGACGCTTTAGATCGGCTCCTGCAGCTGGAACGGATCCAAATG TCGGAGTGTCTCCGGGCCAGAATTGCGACCCGTCGGGTCAAGCCGATTTGTGCGATCGTCGATCATTTGATCTCGTGGCTGGGTTTTGTTTTGGCCGAGA TGGAGATTCCGGCGATTGGGTTTTTCACTTGTGGAGCTTTCTCGAAGGCGATGCAGCACGCGTTGTGGAAGGCTGACTTGGGGAATTCCGGAGTCGGCGC CGGCGAGACCCGGCTGCTTCCCGGTTTACCTGAGCATATGGCGGTTACGGCGTCTGATCTTAAGAGAAGGCCGGTTGGGCCGGATGGAGGACCACCTCAT GGAAGGCATGGTCCGCCTAGACAAGGGTCCGGTTCGCCGCCACCTGGCCGGAGAGGAATGGGACCGTCTAGACTCGGTGGCCTTCCACATTGGTTCCAAA ACAGGGATGGGTTTAGCCAGTACCTCTATAACACCTGTGACGATCTGGAGGGTCCATTCATCGAGTACCTCAATCATGTTTTCGAGAAACCAGTCCAAGC CGTGGGTCCATTGCTACCCACTCAGTATTGGAAGTCCGCCGGATCACTGTTTCGTGATCAGCAAGTGAGAGTGGAGCGCGAGTCAAGCATCAAGGAAGAT GAAGTCATCAAGTGGCTAGACTCGAAACCAATGGGTTCGGTTTTATACGTGTCATTTGGCAGCGAGGTTGGCCCAACACTAGAGGAATACTCATGGTTGG CAAATGCGTTAGAAGCATCGAACAAGTCATTCATCTGGGCAATCCAACTCGCATCGAGCGAGGAATTCGGTCATGGGGACGGAAGTAACGGGTTCTATCC TCACGGTCTCAACAAGAAGGTCGAGGGGAGAGGTCTAATCATCCACGGCTGGGCGCCCCAACTGCTTATCTTAAGCCACCCTTCCACCGCTGCATTCCTC TCACACTGCGGGTGGAATTCGACCTTGGAGGCGGTTATGCGCGGGGTGCCCATACTAGCATGGCCGATCAGAGGGGATCAATACTACAATGCAAAGCTGG TGGTCAAGCACTGGAGAGCCGGTACAATGGTGACCCATGACATGTCGAAGATCGTGGACGAGGACGAGATACGAGAAGGTGTAGAGACCATAATGAGCGA TGATGCAGTGAAGAAGAATGCAGTAGCAATTTGTGCCAAGTTTGAAGATGGGTTTCCTATGAGTTCTCAAGATGCCCTGAATGCTTTCATGGATTCCATC TTGAATCTTCACAATTAA
AA sequence Show only first row Show all	>Lus10012148 pacid=23154918 polypeptide=Lus10012148 locus=Lus10012148.g ID=Lus10012148.BGIv1.0 annot-version=v1.0 MANVNSPISAGEEEIWVITFHGQGHLLPTFQLCNKFVSRKLTTTLFISAAVSSSVPPSLAAGELFTVIEYPPLPPPPPMEEDRHSDDALDRLLQLERIQM SECLRARIATRRVKPICAIVDHLISWLGFVLAEMEIPAIGFFTCGAFSKAMQHALWKADLGNSGVGAGETRLLPGLPEHMAVTASDLKRRPVGPDGGPPH GRHGPPRQGSGSPPPGRRGMGPSRLGGLPHWFQNRDGFSQYLYNTCDDLEGPFIEYLNHVFEKPVQAVGPLLPTQYWKSAGSLFRDQQVRVERESSIKED EVIKWLDSKPMGSVLYVSFGSEVGPTLEEYSWLANALEASNKSFIWAIQLASSEEFGHGDGSNGFYPHGLNKKVEGRGLIIHGWAPQLLILSHPSTAAFL SHCGWNSTLEAVMRGVPILAWPIRGDQYYNAKLVVKHWRAGTMVTHDMSKIVDEDEIREGVETIMSDDAVKKNAVAICAKFEDGFPMSSQDALNAFMDSI LNLHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	0	1
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10002075 [exp]	1.4	0.9581
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021103 [exp]	1.4	0.9572
AT3G44260		AtCAF1a	CCR4- associated factor 1a, Po...		Lus10004212 [exp]	3.2	0.9470
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	3.9	0.9529
AT5G19730			Pectin lyase-like superfamily ...		Lus10012942 [exp]	4.5	0.9444
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	6.0	0.9505
AT3G02780		IDI2, IPIAT1, I...	ATISOPENTENYL DIPHOSPHE ISOMER...		Lus10020210 [exp]	6.0	0.9369
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Lus10018502 [exp]	6.2	0.9256
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	6.5	0.9467
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10029595 [exp]	6.6	0.9222

Compare expression of checked genes

Lus10012148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.