Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19040 1207 / 0 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 1191 / 0 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT3G54800 354 / 1e-111 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT5G10750 213 / 2e-63 Protein of unknown function (DUF1336) (.1) AT2G28320 215 / 7e-60 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT5G35180 213 / 8e-59 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT5G24990 189 / 3e-54 Protein of unknown function (DUF1336) (.1) AT5G25010 182 / 4e-52 Protein of unknown function (DUF1336) (.1) AT1G06050 179 / 8e-51 Protein of unknown function (DUF1336) (.1) AT5G25020 150 / 9e-41 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007596 [exp] 1453 / 0 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10040015 [exp] 317 / 4e-97 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 279 / 3e-83 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 243 / 1e-69 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 235 / 1e-68 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10021465 [exp] 229 / 9e-65 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 229 / 2e-64 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10042428 [exp] 198 / 2e-57 AT5G10750 444 / 6e-158 Protein of unknown function (DUF1336) (.1) Lus10026242 [exp] 192 / 2e-55 AT5G10750 440 / 1e-156 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100600 [exp] 1233 / 0 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.001G132900 [exp] 1226 / 0 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G213000 [exp] 1050 / 0 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G113100 [exp] 307 / 2e-93 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.009G011200 [exp] 221 / 4e-62 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.010G223400 [exp] 205 / 2e-56 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G014234 [exp] 195 / 2e-56 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.008G038800 [exp] 205 / 3e-56 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 172 / 7e-48 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 167 / 2e-46 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF01852 [flax] [poplar] START START domain CL0209 [flax] [poplar] PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10012149 pacid=23154961 polypeptide=Lus10012149 locus=Lus10012149.g ID=Lus10012149.BGIv1.0 annot-version=v1.0 ATGTCGAAGGTGATATACGAAGGATGGATGGTGCGGTACGGGAGGAGGAAGATCGGGCGATCCTTCATCCATATGAGGTACTTCGTGCTGGAGCCAAGAG TTCTTGCTTACTACAAGAAGAAACCGCAGGATAATCAGGTACCGATCAAGACCCTCTTGATCGATGGCAATTGTAGGGTGGAGGATCGAGGCTTGAAGAC TCATCATGGACTTATGGTTTATGTGCTATCAGTATACAACAAGAAGGAGAAATATCATAGAATCACGATGGCGGCATTTAACATCCAGGAAGCTCTGATC TGGAAGGAAAAGATTCAGTTTGTAATTGACCAGCATCAAGAGTCTCAGGCGTCAAATGGGAACAAATATGTTTCCTTTGAGTATAAGTCTGGGATGGATA ATGGAAGGACTGCTTCCTCCTCAGACCATGAAAGCCAGTTTAGTGCTCAAGAGGATGAAGAGGACTCTCGTCCAAATTTATTGAGGAGGACAACTGTTGG AAATGGTCTCCCCGATTCGGTATTTGACTGGACAAGAGAAATTGACTCGGAACTAACCAACCAAAATGCTAACAATCAAGCATTTTCCAGAAAGCATTGG CGACTGCTGCAATGTCAAAATGGGCTTCGCATTTTTGAAGAGCTTCTTGAAGTTGAATACCTTCCAAGGAGCTGTAGTAGAGCGATGAAGGCTGTCGGTG TTGTTGAGGCTACCTGTGAAGAGATATTTGAACAAGTAATGAGCATGGATGGGACACGGTTTGAGTGGGATTGTACTTTCCAGTATGGTAGTTTGGTTGA GGAGGGTGATGGGCATACTGCAGTTCTGTATCATAGGCTTCAACTGGATTGGTTTTCAATGTTTGTCTGGCCACGTGATCTTTGCTATGTACGCTATTGG CGCCGAAATGATGATGGAAGTTATGTTGTCTTGTTTCGCTCAAGAGAACACGAAAATTGTGGTTCACAACCAGGTTACGTGCGGGCTCATATTGAGAGTG GGGGTTTCAACATTTCTCCTCTAAAACCCAGGAACGGGAGACCTAGAAGTCAGGTCCAGCACCTAATCCAGATTGATTTGAAAGGATGGGGTGTCGGCTA TGTTTCAGCGTTTCAGCAACACTGTCTCCTTCAGATGTTGAATAGTGTCGCTGGACTGCGTGAATGGTTCGCCCAATCAGATGAAAGAGGTGCTCCGCCA AGAATCCCTGTCATGGTCAATATGGCCTCAGCTTCTATTTCATCCAAGAAGAACTTAAAGTTGCAGGAGTCATCCGTTCATCATCGTTCTGCTTCTCTTG ATCAAATGACCGCGGCAGGCAGAAACTCGGCCATGATGGATGAGTACTCTGACGAGGACGAAGAATTTCAAATTGCTGAAGAAGAACAAGAGGCTTACGC TCTTAGTCAGGAGATTGATGGGAAGAAAACAGCTTTAGAAGAACCTGTAGATGATATCGACCATTCATGGTTTTCTGGTAATCTACGCTACGATGAACGA GAAAATGCCCGCGATAGCTGGAAAATTTCTGATGGGAACAACTTCAGAGTCCGTAGCAGAAACTTCAGCTATGACAAATCAAAGATCCCGGCAGGAAAAC ATTTGATGGATCTAGTTGCTGTTGATTGGTTCAAAGACACGAAAAGAATGGATCATGTCGCTAGGCGTCAAGGATGTGCGGCACAAGTTGCTTCAGAGAA AGGACTTTTCACTGTGGTGCTCAATCTGCAAGTCCCCGGTTCAACACATTACAGTATGGTGTTTTACTATGTGACGAAAGCATTAGTCCCTGGATCTCTC TTGGAGAGGTTCATTGACGGCGACGACGAATTTCGCAACAGTAGGTTTAAACTGATTCCGTCAGTTCCCAAGGGGTCATGGATCGTACGTCAGAGCGTTG GAAGTACTCCGTGTTTATTGGGGAAAGCAGTCGACTGCAACTATATCCGTGGTCCAAAATACCTCGAAATCGATGTCGACATCGGTTCTTCCACTGTTGC CAACGGAGTACTAGGGCTTGTGATTGGTGTCATAACTACCTTGGTCGTCGACATGGCTATCCTTGTACAGGCAAACACAACCGACGAGCTGCCCGAACGT TTGATCGGGGCAGTTAGGGTATCCCACATAGAGTTGTCATCTGCAATTGTCCCGAACTTGGATCCATCTTAG
AA sequence Show only first row Show all	>Lus10012149 pacid=23154961 polypeptide=Lus10012149 locus=Lus10012149.g ID=Lus10012149.BGIv1.0 annot-version=v1.0 MSKVIYEGWMVRYGRRKIGRSFIHMRYFVLEPRVLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGLMVYVLSVYNKKEKYHRITMAAFNIQEALI WKEKIQFVIDQHQESQASNGNKYVSFEYKSGMDNGRTASSSDHESQFSAQEDEEDSRPNLLRRTTVGNGLPDSVFDWTREIDSELTNQNANNQAFSRKHW RLLQCQNGLRIFEELLEVEYLPRSCSRAMKAVGVVEATCEEIFEQVMSMDGTRFEWDCTFQYGSLVEEGDGHTAVLYHRLQLDWFSMFVWPRDLCYVRYW RRNDDGSYVVLFRSREHENCGSQPGYVRAHIESGGFNISPLKPRNGRPRSQVQHLIQIDLKGWGVGYVSAFQQHCLLQMLNSVAGLREWFAQSDERGAPP RIPVMVNMASASISSKKNLKLQESSVHHRSASLDQMTAAGRNSAMMDEYSDEDEEFQIAEEEQEAYALSQEIDGKKTALEEPVDDIDHSWFSGNLRYDER ENARDSWKISDGNNFRVRSRNFSYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRQGCAAQVASEKGLFTVVLNLQVPGSTHYSMVFYYVTKALVPGSL LERFIDGDDEFRNSRFKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAILVQANTTDELPER LIGAVRVSHIELSSAIVPNLDPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	0	1
AT3G59660			C2 domain-containing protein /...		Lus10027067 [exp]	1.0	0.9288
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027698 [exp]	1.7	0.9247
AT3G14910			unknown protein		Lus10043078 [exp]	2.8	0.9264
AT1G10290		DRP2A, ADL6	DYNAMIN-RELATED PROTEIN 2A, dy...		Lus10024461 [exp]	7.1	0.8491
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	7.5	0.8892
AT2G32970			unknown protein		Lus10035309 [exp]	7.7	0.8991
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	8.9	0.9126
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	9.6	0.8499
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10001377 [exp]	9.7	0.8308
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	11.2	0.8905

Compare expression of checked genes

Lus10012149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.