Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09570 1799 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT2G18790 1148 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1134 / 0 PHYD phytochrome D (.1) AT5G35840 1121 / 0 PHYC phytochrome C (.1) AT4G18130 996 / 0 PHYE phytochrome E (.1) AT5G10720 59 / 2e-08 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007594 [exp] 2217 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10037771 [exp] 1177 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1174 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10006389 [exp] 1140 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10012342 [exp] 1078 / 0 AT5G35840 1363 / 0.0 phytochrome C (.1) Lus10011967 [exp] 1035 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10004593 [exp] 378 / 1e-120 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10006388 [exp] 363 / 2e-114 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004592 [exp] 214 / 4e-61 AT4G18130 321 / 1e-100 phytochrome E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000300 [exp] 1839 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.008G105200 [exp] 1180 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 1166 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.006G270500 [exp] 56 / 2e-07 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.018G011400 [exp] 56 / 2e-07 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.002G201500 [exp] 52 / 3e-06 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.013G009700 [exp] 48 / 5e-05 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0183 [flax] [poplar] PAS_Fold PF08446 [flax] [poplar] PAS_2 PAS fold CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10012151 pacid=23154910 polypeptide=Lus10012151 locus=Lus10012151.g ID=Lus10012151.BGIv1.0 annot-version=v1.0 ATGTCTACATCAAGGCCGACCCAATCGTCAAATTCTCGCCGGAGCGACAGAGTGATCGCTCAAACAACAGTAGACGCGAAGCTCCACGCCGACTTCGAAG AATCCGGTAGCTCATTCGACTACTCCAGCTCTATCCGAGTCACAAGCTCCTCCTCCTCACTCCCACCACCACAACAACAGAATCAGCTCAGACCCAAGTC AGACAAGCTCACCACAGCTTACCTCCACCACATCCAGAAAGGAAAGCAGATCCAGCCCTTCGGCTGCTTACTAGCCCTCGACGACAAGACTTATCGAGTC ATCGCGTACAGCGAGAACGCCCCCGAGATGTTGACCATGGTCAACCACGCCGTCCCCAGCGTCGGTGAGATCCCCACTCTAGGAATCGGCACCGATTTGA GAACAATCTTCACTCCTCCGAGCGCCAACGCTTTAATCAAGGCGCTAGGGTTCGGCGACATTGCTCTTCTCAACCCGATTTTGGTCCACTGCAAAACCTC TGGAAAACCGTACTACGCCATTGTTCATAGGGTTACGGGAAGCTTGATTGTCGATTTCGAGCCGGTCAAGCCTTACGAGGTAGCTGCGACGACGAAGGGG GCGTTGCAGTCGTACATGCTGGCGGCGAAGGCGATCACGAGGCTGCAAGGTTTGCCGAGTGGGAGTATGGAGAGGCTGTGCGACACCATGGTTCAGGAAG TGTTCGAACTTAGCGGCTATGATAGAGTGATGGCTTACAAGTTTCACGACGACGATCATGGCGAAGTTGTCTCCGAGATTACGAAGCCTGGATTAGAGCC TTATTTGGGGCTGCATTATCCCGCTACTGACATCCCTCAAGCTGCGAGGTTCTTGTTTATGAAGAACAAAGTTAGGATGATTGTTGACTGTAGAGCTAAG CATGTCAAAGTACTTCAAGACGATAAGCTTGATTTCGAGCTGACTTTATGCGGTTCGACTCTGAGAGCTCCACATAGCTGCCATTTGCAATACATGGAGA ACATGGACTCGATCGCTTCGTTGGTTATGGCCGTGATTGTTAACGAAGAAGGCGACGATAACAATGGTGATGGTCAGGAGTTGCAGCAGAAGAGAAAGAG GCTATGGGGGTTGGTAGTGTGTCATAATACTACCCCGAGGTTCGTTCCTTTCCCGGTTCGTTCCGCTTGTGAGTTTCTAGCTCAGGTCTTTGCTATCCAT GTGAATAAAGAGATAGAGCTTGAGAATCAGATTGTAGAGAAGAATATCCTCCGTACGCAGACGTTATTATGCGATATGTTGATGCGAGATGCGCCTTTGG GGATCGTGACTCAGTCTCCGAATGTTATGGATCTTGTCAAGTGTGATGGTGCTGCATTGGTCTACAAGAACAAAGTATGGAGGCTCGGTGTGACTCCCTC TGATTTCCAAATCCAGGACGTTGCTCGGTGGTTATCTGAGTATCATATGGATTCAACTGGTTTGAGTACCGATAGCTTGTACGATGCAGGCTATCCCGGT GCGTTAGCTCTCGGTGATGTGGTCTGTGGGATGGCGGCTGTGAGGATAAGCTCCCACGATTTGTTGTTCTGGTTTCGTGCACAAACTGCATCGGAAGTTC GATGGGGTGGTGCGAAGCATGAGCATGGGGAGGAGGATGATGGGAGGAAGATGCATCCGAGATCGTCGTTCAAGGCGTTTCTCGAGGTTGTCAAGGCGAG GAGCTTGCCTTGGAAGGACTATGAGATGGATGCTATACATTCTCTGCAGCTTATACTGAGGAATGCGTTTAAGGATGGGGAGGGGGGCGTGGATGTTGAT GCGAAGATGATCCATACGAGGCTTAGTGATCTTAAGATCGATGGGATGCAGGAGCTCGAAGCTGTGACGGGTGAGATGGTTCGTTTGATCGAAACGGCTA CTGTGCCGATCTTGGCTGTTGATGTCGACGGTCTCGTTAATGGATGGAACTCCAAGATTGCTGAGTTGACTGGTCTTTCGATTGATGAAGCTATAGGGAA GGAATTGTTGACGCTTGTGGAAGAGTCTTCTGTCCAGACTGTTCAGCAGATGCTGGCCTTTGCCCTGGAAGGCAAAGAGGAGCAAAACGTCCAATTCGAG ATAAAGACTCATGGTACTAAGAGCAATCATGGCCCAATCAGCTTGGTAGTAAACGCTTGTGCGAGTCGAGACCTTCAAGAGAGCGTAGTAGGTGTCTGCT TCGTGGCTCAAGACATCACGGGGCATAAGATCGTGATGGACAAGTTCACCCGGATAGAAGGCGACTACAAATCCATCGTGCAGAACCCGAACCCGTTGAT CCCTCCCATTTTCGGGGCAGACGAGTTCGGGTGGTGCTCGGAGTGGAACACAGCCATGACCACCTTAACCGGCTGGAACCGAGAAACAGTGGTCGACAAA ATGCTTCTCGGAGAGGTGTTCGGGACAAACACCTCGGCCTCTTGTCGCTTGAAGAACAAGGAAGCGTTTGTCAACTTAGGCATTGCGCTCAACAACGCCA TGGCCGGACACGAACCTCAGAAGGTGTCGTTTGGGTTTTTTGCCAGGAATGGGAAGTATGTTGATTGCTTGCTGTGTATGAGCAAGAAGCTTGACCAAGA AGGCGCTGTCACGGGTGTCTTCTGCTTCCTCCAGCTTGCGAGCCAAGAGCTTCAGCATGCACTTCATGTCCAGAGGCTCTCGGAGCAAACTGCGTTAAAG AGGTTGAAAGCACTGGCGTACATCAAGAGACAGGTCAGGAACCCTTTGTCTGGAATCGTGTTTTCAAGGAAGATGCTCGAGAGGACCGAGCTTGGAGCAG AACAGAAACAGCTCCTGCAAACTAGTGCACAGTGTCAACGTCAACTCAGTAGGATCCTCGATGACTCGGATCTCGATACTATCATTGAAGGATGCTTGGA CCTGGAAATGGTGGAGTTCAACCTACACGAAGTAATGGTTGCATCGATCAGTCAAGTTATGATGAAGTGCAACGGGAAGGGGATTCGAATCATTAACGAT GCACCAGACGAGATCATGACCGAGACCTTATACGGGGACAGCATTCGGCTTCAGCAAGTTCTGGCAGATTTCTTGTTGATATCTGTCAACTCTACCCCGT CGGCTGGACAGCTTACCCTTGCCGCTAGCTTGACCAAGGATCAGCTAGGCCAGTCAGTACATCTCGCAAACCTCGAGCTCAGGATAACACACGCTGGGCA GGGAATACCAGAAGGGGTGTTGAGCCAGATGTTCGGAACGGAGGGGGACACGTCGGAGGAAGGGATCGGATTGTTGGTGAGCATGAAGCTCGTGAAGCTC ATGAATGGAGATGTGAAGTATCTAAGGGAGTCGGGTAAGTCTAGTTTCATCATCTCTGTTGAACTTGCTGCTGCTGCTGCTGCACATACGTTGAGAACCT AA
AA sequence Show only first row Show all	>Lus10012151 pacid=23154910 polypeptide=Lus10012151 locus=Lus10012151.g ID=Lus10012151.BGIv1.0 annot-version=v1.0 MSTSRPTQSSNSRRSDRVIAQTTVDAKLHADFEESGSSFDYSSSIRVTSSSSSLPPPQQQNQLRPKSDKLTTAYLHHIQKGKQIQPFGCLLALDDKTYRV IAYSENAPEMLTMVNHAVPSVGEIPTLGIGTDLRTIFTPPSANALIKALGFGDIALLNPILVHCKTSGKPYYAIVHRVTGSLIVDFEPVKPYEVAATTKG ALQSYMLAAKAITRLQGLPSGSMERLCDTMVQEVFELSGYDRVMAYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAK HVKVLQDDKLDFELTLCGSTLRAPHSCHLQYMENMDSIASLVMAVIVNEEGDDNNGDGQELQQKRKRLWGLVVCHNTTPRFVPFPVRSACEFLAQVFAIH VNKEIELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNVMDLVKCDGAALVYKNKVWRLGVTPSDFQIQDVARWLSEYHMDSTGLSTDSLYDAGYPG ALALGDVVCGMAAVRISSHDLLFWFRAQTASEVRWGGAKHEHGEEDDGRKMHPRSSFKAFLEVVKARSLPWKDYEMDAIHSLQLILRNAFKDGEGGVDVD AKMIHTRLSDLKIDGMQELEAVTGEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSIDEAIGKELLTLVEESSVQTVQQMLAFALEGKEEQNVQFE IKTHGTKSNHGPISLVVNACASRDLQESVVGVCFVAQDITGHKIVMDKFTRIEGDYKSIVQNPNPLIPPIFGADEFGWCSEWNTAMTTLTGWNRETVVDK MLLGEVFGTNTSASCRLKNKEAFVNLGIALNNAMAGHEPQKVSFGFFARNGKYVDCLLCMSKKLDQEGAVTGVFCFLQLASQELQHALHVQRLSEQTALK RLKALAYIKRQVRNPLSGIVFSRKMLERTELGAEQKQLLQTSAQCQRQLSRILDDSDLDTIIEGCLDLEMVEFNLHEVMVASISQVMMKCNGKGIRIIND APDEIMTETLYGDSIRLQQVLADFLLISVNSTPSAGQLTLAASLTKDQLGQSVHLANLELRITHAGQGIPEGVLSQMFGTEGDTSEEGIGLLVSMKLVKL MNGDVKYLRESGKSSFIISVELAAAAAAHTLRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	0	1
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	1.7	0.9284
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	3.5	0.9203
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	7.1	0.9037
AT4G04940			transducin family protein / WD...		Lus10036625 [exp]	7.1	0.8721
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	8.8	0.8751
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	8.9	0.8763
AT4G20160			unknown protein		Lus10036249 [exp]	9.2	0.8747
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	9.5	0.8721
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	10.2	0.8685
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	12.2	0.8904

Compare expression of checked genes

Lus10012151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.